Richard Bonneau
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Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
13792012
Tweeting from left to right: Is online political communication more than an echo chamber?
P Barberá, JT Jost, J Nagler, JA Tucker, R Bonneau
Psychological science 26 (10), 1531-1542, 2015
10342015
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
AG Baltz, M Munschauer, B Schwanhäusser, A Vasile, Y Murakawa, ...
Molecular cell 46 (5), 674-690, 2012
9702012
A validated regulatory network for Th17 cell specification
M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ...
Cell 151 (2), 289-303, 2012
8922012
Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome
EA Miao, DP Mao, N Yudkovsky, R Bonneau, CG Lorang, SE Warren, ...
Proceedings of the National Academy of Sciences 107 (7), 3076-3080, 2010
7432010
Ab initio protein structure prediction of CASP III targets using ROSETTA
KT Simons, R Bonneau, I Ruczinski, D Baker
Proteins: Structure, Function, and Bioinformatics 37 (S3), 171-176, 1999
6441999
Sparse and compositionally robust inference of microbial ecological networks
ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau
PLoS Comput Biol 11 (5), e1004226, 2015
5862015
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7 (5), 1-16, 2006
5682006
The Rosetta all-atom energy function for macromolecular modeling and design
RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ...
Journal of chemical theory and computation 13 (6), 3031-3048, 2017
4732017
Structural bioinformatics
J Gu, PE Bourne
John Wiley & Sons, 2009
4662009
Ab initio protein structure prediction: progress and prospects
R Bonneau, D Baker
Annual review of biophysics and biomolecular structure 30 (1), 173-189, 2001
4082001
Rosetta in CASP4: progress in ab initio protein structure prediction
R Bonneau, J Tsai, I Ruczinski, D Chivian, C Rohl, CEM Strauss, D Baker
Proteins: Structure, Function, and Bioinformatics 45 (S5), 119-126, 2001
3752001
An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses
T Sano, W Huang, JA Hall, Y Yang, A Chen, SJ Gavzy, JY Lee, JW Ziel, ...
Cell 163 (2), 381-393, 2015
3622015
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
3582004
Automated prediction of CASP‐5 structures using the Robetta server
D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003
3322003
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
3202007
De novo prediction of three-dimensional structures for major protein families
R Bonneau, CEM Strauss, CA Rohl, D Chivian, P Bradley, L Malmström, ...
Journal of molecular biology 322 (1), 65-78, 2002
3142002
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
DJ Reiss, NS Baliga, R Bonneau
BMC bioinformatics 7 (1), 1-22, 2006
2962006
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2802016
ICOS-based chimeric antigen receptors program bipolar TH17/TH1 cells
S Guedan, X Chen, A Madar, C Carpenito, SE McGettigan, MJ Frigault, ...
Blood 124 (7), 1070-1080, 2014
2702014
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Artiklar 1–20