Lars Malmström
Lars Malmström
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OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ...
Nature biotechnology 32 (3), 219-223, 2014
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry
F Herzog, A Kahraman, D Boehringer, R Mak, A Bracher, T Walzthoeni, ...
Science 337 (6100), 1348-1352, 2012
Automated prediction of CASP‐5 structures using the Robetta server
D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003
Assigning function to yeast proteins by integration of technologies
TR Hazbun, L Malmström, S Anderson, BJ Graczyk, B Fox, M Riffle, ...
Molecular cell 12 (6), 1353-1365, 2003
De novo prediction of three-dimensional structures for major protein families
R Bonneau, CEM Strauss, CA Rohl, D Chivian, P Bradley, L Malmström, ...
Journal of molecular biology 322 (1), 65-78, 2002
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ...
Nature methods 13 (9), 741-748, 2016
An objective comparison of cell-tracking algorithms
V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ...
Nature methods 14 (12), 1141-1152, 2017
Prediction of CASP6 structures using automated Robetta protocols
D Chivian, DE Kim, L Malmström, J Schonbrun, CA Rohl, D Baker
Proteins: Structure, Function, and Bioinformatics 61 (S7), 157-166, 2005
Free modeling with Rosetta in CASP6
P Bradley, L Malmström, B Qian, J Schonbrun, D Chivian, DE Kim, ...
Proteins: Structure, Function, and Bioinformatics 61 (S7), 128-134, 2005
An automated pipeline for high-throughput label-free quantitative proteomics
H Weisser, S Nahnsen, J Grossmann, L Nilse, A Quandt, H Brauer, ...
Journal of proteome research 12 (4), 1628-1644, 2013
Cross-link guided molecular modeling with ROSETTA
A Kahraman, F Herzog, A Leitner, G Rosenberger, R Aebersold, ...
PloS one 8 (9), e73411, 2013
Xwalk: computing and visualizing distances in cross-linking experiments
A Kahraman, L Malmström, R Aebersold
Bioinformatics 27 (15), 2163-2164, 2011
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics
HL Röst, Y Liu, G D'Agostino, M Zanella, P Navarro, G Rosenberger, ...
Nature methods 13 (9), 777-783, 2016
Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM
DE Kim, D Chivian, L Malmström, D Baker
Proteins: Structure, Function, and Bioinformatics 61 (S7), 193-200, 2005
openBIS: a flexible framework for managing and analyzing complex data in biology research
A Bauch, I Adamczyk, P Buczek, FJ Elmer, K Enimanev, P Glyzewski, ...
BMC bioinformatics 12 (1), 468, 2011
A computational tool to detect and avoid redundancy in selected reaction monitoring
H Röst, L Malmström, R Aebersold
Molecular & Cellular Proteomics 11 (8), 540-549, 2012
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS
G Rosenberger, Y Liu, HL Röst, C Ludwig, A Buil, A Bensimon, M Soste, ...
Nature biotechnology 35 (8), 781-788, 2017
xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry
T Walzthoeni, LA Joachimiak, G Rosenberger, HL Röst, L Malmström, ...
Nature methods 12 (12), 1185-1190, 2015
DIANA—algorithmic improvements for analysis of data-independent acquisition MS data
J Teleman, HL Röst, G Rosenberger, U Schmitt, L Malmström, ...
Bioinformatics 31 (4), 555-562, 2015
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