David Slochower
David Slochower
Vertex Pharmaceuticals
Verified email at ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Kinase associated-1 domains drive MARK/PAR1 kinases to membrane targets by binding acidic phospholipids
K Moravcevic, JM Mendrola, KR Schmitz, YH Wang, D Slochower, ...
Cell 143 (6), 966-977, 2010
1562010
Overview of the SAMPL5 host–guest challenge: Are we doing better?
J Yin, NM Henriksen, DR Slochower, MR Shirts, MW Chiu, DL Mobley, ...
Journal of computer-aided molecular design 31 (1), 1-19, 2017
1252017
Polyelectrolyte properties of filamentous biopolymers and their consequences in biological fluids
PA Janmey, DR Slochower, YH Wang, Q Wen, A Cēbers
Soft matter 10 (10), 1439-1449, 2014
702014
Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion
JE Donald, Y Zhang, G Fiorin, V Carnevale, DR Slochower, F Gai, ...
Proceedings of the National Academy of Sciences 108 (10), 3958-3963, 2011
662011
Escaping atom types in force fields using direct chemical perception
DL Mobley, CC Bannan, A Rizzi, CI Bayly, JD Chodera, VT Lim, NM Lim, ...
Journal of chemical theory and computation 14 (11), 6076-6092, 2018
652018
Counterion-mediated cluster formation by polyphosphoinositides
YH Wang, DR Slochower, PA Janmey
Chemistry and physics of lipids 182, 38-51, 2014
462014
Quantum and All-Atom Molecular Dynamics Simulations of Protonation and Divalent Ion Binding to Phosphatidylinositol 4,5-Bisphosphate (PIP2)
DR Slochower, PJ Huwe, R Radhakrishnan, PA Janmey
The journal of physical chemistry B 117 (28), 8322-8329, 2013
402013
The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations
A Rizzi, T Jensen, DR Slochower, M Aldeghi, V Gapsys, D Ntekoumes, ...
Journal of computer-aided molecular design 34 (5), 601-633, 2020
342020
Counterion-mediated pattern formation in membranes containing anionic lipids
DR Slochower, YH Wang, RW Tourdot, R Radhakrishnan, PA Janmey
Advances in colloid and interface science 208, 177-188, 2014
342014
The SAMPL5 host–guest challenge: computing binding free energies and enthalpies from explicit solvent simulations by the attach-pull-release (APR) method
J Yin, NM Henriksen, DR Slochower, MK Gilson
Journal of computer-aided molecular design 31 (1), 133-145, 2017
212017
Salmon-derived thrombin inhibits development of chronic pain through an endothelial barrier protective mechanism dependent on APC
JR Smith, PA Galie, DR Slochower, CL Weisshaar, PA Janmey, ...
Biomaterials 80, 96-105, 2016
162016
Optimization of coded aperture radioscintigraphy for sentinel lymph node mapping
H Fujii, JD Idoine, S Gioux, R Accorsi, DR Slochower, RC Lanza, ...
Molecular imaging and biology 14 (2), 173-182, 2012
152012
Binding thermodynamics of Host–Guest systems with SMIRNOFF99Frosst 1.0. 5 from the open force field initiative
DR Slochower, NM Henriksen, LP Wang, JD Chodera, DL Mobley, ...
Journal of chemical theory and computation 15 (11), 6225-6242, 2019
142019
Open collaborative writing with Manubot
DS Himmelstein, V Rubinetti, DR Slochower, D Hu, VS Malladi, ...
PLoS computational biology 15 (6), e1007128, 2019
142019
Motor-like properties of nonmotor enzymes
DR Slochower, MK Gilson
Biophysical journal 114 (9), 2174-2179, 2018
122018
Physical chemistry and membrane properties of two phosphatidylinositol bisphosphate isomers
DR Slochower, YH Wang, R Radhakrishnan, PA Janmey
Physical Chemistry Chemical Physics 17 (19), 12608-12615, 2015
112015
Divalent cations bind to phosphoinositides to induce ion and isomer specific propensities for nano-cluster initiation in bilayer membranes
RP Bradley, DR Slochower, PA Janmey, R Radhakrishnan
Royal Society Open Science 7 (5), 192208, 2020
62020
Molecular dynamics simulations of ion binding and protonation of phosphatidylinositol bisphosphate (PIP2)
DR Slochower, PJ Huwe, RP Bradley, R Radhakrishnan, PA Janmey
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 244, 2012
22012
Molecular Dynamics Simulations of Monolayers and Membranes with Phosphatidylinositol Bisphosphate
DR Slochower, PA Janmey
Biophysical Journal 100 (3), 88a, 2011
22011
Experimental characterization of the association of nine novel cyclodextrin derivatives with two guest compounds
K Kellett, D Slochower, M Schauperl, BM Duggan, M Gilson
ChemRxiv, 2020
12020
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Articles 1–20