|Smoothened variants explain the majority of drug resistance in basal cell carcinoma|
SX Atwood, KY Sarin, RJ Whitson, JR Li, G Kim, M Rezaee, MS Ally, J Kim, ...
Cancer cell 27 (3), 342-353, 2015
|Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data|
Y Guo, Q Sheng, J Li, F Ye, DC Samuels, Y Shyr
PloS one 8 (8), e71462, 2013
|TNBCtype: a subtyping tool for triple-negative breast cancer|
X Chen, J Li, WH Gray, BD Lehmann, JA Bauer, Y Shyr, JA Pietenpol
Cancer informatics 11, CIN. S9983, 2012
|Human COL7A1-corrected induced pluripotent stem cells for the treatment of recessive dystrophic epidermolysis bullosa|
V Sebastiano, HH Zhen, B Haddad, E Bashkirova, SP Melo, P Wang, ...
Science translational medicine 6 (264), 264ra163-264ra163, 2014
|The effect of strand bias in Illumina short-read sequencing data|
Y Guo, J Li, CI Li, J Long, DC Samuels, Y Shyr
BMC genomics 13 (1), 1-11, 2012
|Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data|
Q Liu, Y Guo, J Li, J Long, B Zhang, Y Shyr
BMC genomics 13 (8), 1-8, 2012
|RAS/MAPK activation drives resistance to Smo inhibition, metastasis, and tumor evolution in Shh pathway–dependent tumors|
X Zhao, T Ponomaryov, KJ Ornell, P Zhou, SK Dabral, E Pak, W Li, ...
Cancer research 75 (17), 3623-3635, 2015
|High expression of MAGE-A9 correlates with unfavorable survival in hepatocellular carcinoma|
X Gu, M Fu, Z Ge, F Zhan, Y Ding, H Ni, W Zhang, Y Zhu, X Tang, L Xiong, ...
Scientific reports 4 (1), 1-7, 2014
|MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis|
Y Guo, J Li, CI Li, Y Shyr, DC Samuels
Bioinformatics 29 (9), 1210-1211, 2013
|DOSim: an R package for similarity between diseases based on disease ontology|
J Li, B Gong, X Chen, T Liu, C Wu, F Zhang, C Li, X Li, S Rao, X Li
BMC bioinformatics 12 (1), 1-10, 2011
|Multi-perspective quality control of Illumina exome sequencing data using QC3|
Y Guo, S Zhao, Q Sheng, F Ye, J Li, B Lehmann, J Pietenpol, DC Samuels, ...
Genomics 103 (5-6), 323-328, 2014
|High expression of inositol polyphosphate phosphatase-like 1 associates with unfavorable survival in hepatocellular carcinoma|
M Fu, X Gu, H Ni, W Zhang, F Chang, L Gong, X Chen, J Li, L Qiu, C Shi, ...
International journal of clinical and experimental pathology 6 (11), 2515, 2013
|Noncanonical hedgehog pathway activation through SRF–MKL1 promotes drug resistance in basal cell carcinomas|
RJ Whitson, A Lee, NM Urman, A Mirza, CY Yao, AS Brown, JR Li, ...
Nature medicine 24 (3), 271, 2018
|Comparison of Nanostring nCounter® Data on FFPE Colon Cancer Samples and Affymetrix Microarray Data on Matched Frozen Tissues|
X Chen, NG Deane, KB Lewis, J Li, J Zhu, MK Washington, ...
PloS one 11 (5), e0153784, 2016
|High SHIP2 expression indicates poor survival in colorectal cancer|
J Yang, M Fu, Y Ding, Y Weng, W Fan, X Pu, Z Ge, F Zhan, H Ni, W Zhang, ...
Disease markers 2014, 2014
|TIMP-3 expression associates with malignant behaviors and predicts favorable survival in HCC|
X Gu, M Fu, Y Ding, H Ni, W Zhang, Y Zhu, X Tang, L Xiong, J Li, L Qiu, ...
PLoS One 9 (8), e106161, 2014
|TFAP2C-and p63-dependent networks sequentially rearrange chromatin landscapes to drive human epidermal lineage commitment|
L Li, Y Wang, JL Torkelson, G Shankar, JM Pattison, HH Zhen, F Fang, ...
Cell Stem Cell 24 (2), 271-284. e8, 2019
|From phenotype to gene: detecting disease-specific gene functional modules via a text-based human disease phenotype network construction|
SH Zhang, C Wu, X Li, X Chen, W Jiang, BS Gong, J Li, YQ Yan
FEBS letters 584 (16), 3635-3643, 2010
|Evaluation of allele frequency estimation using pooled sequencing data simulation|
Y Guo, DC Samuels, J Li, T Clark, CI Li, Y Shyr
The Scientific World Journal 2013, 2013
|Rolling the genetic dice: neutral and deleterious smoothened mutations in drug-resistant basal cell carcinoma|
SX Atwood, KY Sarin, JR Li, C Yao, NM Urman, ALS Chang, JY Tang, ...
The Journal of investigative dermatology 135 (8), 2138, 2015