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Hasindu Gamaarachchi
Hasindu Gamaarachchi
Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research
Verified email at garvan.org.au
Title
Cited by
Cited by
Year
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
Nature communications 11 (1), 1-8, 2020
1522020
Autonomic trust management in cloud-based and highly dynamic IoT applications
S Namal, H Gamaarachchi, G MyoungLee, TW Um
2015 ITU Kaleidoscope: Trust in the Information Society (K-2015), 1-8, 2015
442015
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis
H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ...
BMC bioinformatics 21 (1), 1-13, 2020
332020
Seed-and-vote based in-memory accelerator for dna read mapping
AF Laguna, H Gamaarachchi, X Yin, M Niemier, S Parameswaran, XS Hu
2020 IEEE/ACM International Conference On Computer Aided Design (ICCAD), 1-9, 2020
202020
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ...
Science advances 8 (9), eabm5386, 2022
182022
Power analysis based side channel attack
H Gamaarachchi, H Ganegoda
arXiv preprint arXiv:1801.00932, 2018
182018
Genopo: a nanopore sequencing analysis toolkit for portable Android devices
H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ...
Communications biology 3 (1), 1-5, 2020
15*2020
Fast nanopore sequencing data analysis with SLOW5
H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ...
Nature biotechnology, 1-4, 2022
142022
Featherweight long read alignment using partitioned reference indexes
H Gamaarachchi, S Parameswaran, MA Smith
Scientific reports 9 (1), 1-12, 2019
142019
Accelerating correlation power analysis using graphics processing units (gpus)
H Gamaarachchi, R Ragel, D Jayasinghe
7th International Conference on Information and Automation for …, 2014
112014
Accelerating text-based plagiarism detection using gpus
MAC Jiffriya, MACA Jahan, H Gamaarachchi, RG Ragel
2015 IEEE 10th International Conference on Industrial and Information …, 2015
72015
Breaking Speck cryptosystem using correlation power analysis attack
H Gamaarachchi, H Ganegoda, R Ragel
Journal of the National Science Foundation of Sri Lanka 45 (4), 393-404, 2017
62017
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses
JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ...
Bioinformatics 38 (5), 1443-1446, 2022
52022
Generalized and hybrid fast-ica implementation using gpu
TN Kumara, H Gamaarachchi, G Prathap, R Ragel
2016 Sixteenth International Conference on Advances in ICT for Emerging …, 2016
52016
Swaram: Portable energy and cost efficient embedded system for genomic processing
RP Mohanty, H Gamaarachchi, A Lambert, S Parameswaran
ACM Transactions on Embedded Computing Systems (TECS) 18 (5s), 1-24, 2019
32019
The a to z of building a testbed for power analysis attacks
H Gamaarachchi, H Ganegoda, R Ragel
2015 IEEE 10th International Conference on Industrial and Information …, 2015
32015
Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices
PJ Shih, H Saadat, S Parameswaran, H Gamaarachchi
arXiv preprint arXiv:2211.07340, 2022
2022
Optimization of plagiarism detection using vector space model on CUDA architecture
AC Jiffriya Mohamed, MAC Akmal Jahan, G Hasindu, GR Roshan
Inder Science Publishers, 2022
2022
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference
J Gong, H Saadat, H Gamaarachchi, H Javaid, XS Hu, S Parameswaran
arXiv preprint arXiv:2209.04161, 2022
2022
DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing
A Senanayake, H Gamaarachchi, D Herath, R Ragel
bioRxiv, 2022
2022
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Articles 1–20