Hasindu Gamaarachchi
Hasindu Gamaarachchi
Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research
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Cited by
Cited by
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ...
Nature communications 11 (1), 1-8, 2020
Autonomic trust management in cloud-based and highly dynamic IoT applications
S Namal, H Gamaarachchi, G MyoungLee, TW Um
2015 ITU Kaleidoscope: Trust in the Information Society (K-2015), 1-8, 2015
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis
H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ...
BMC bioinformatics 21 (1), 1-13, 2020
Seed-and-vote based in-memory accelerator for dna read mapping
AF Laguna, H Gamaarachchi, X Yin, M Niemier, S Parameswaran, XS Hu
2020 IEEE/ACM International Conference On Computer Aided Design (ICCAD), 1-9, 2020
Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ...
Science advances 8 (9), eabm5386, 2022
Power analysis based side channel attack
H Gamaarachchi, H Ganegoda
arXiv preprint arXiv:1801.00932, 2018
Genopo: a nanopore sequencing analysis toolkit for portable Android devices
H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ...
Communications biology 3 (1), 1-5, 2020
Fast nanopore sequencing data analysis with SLOW5
H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ...
Nature biotechnology, 1-4, 2022
Featherweight long read alignment using partitioned reference indexes
H Gamaarachchi, S Parameswaran, MA Smith
Scientific reports 9 (1), 1-12, 2019
Accelerating correlation power analysis using graphics processing units (gpus)
H Gamaarachchi, R Ragel, D Jayasinghe
7th International Conference on Information and Automation for …, 2014
Accelerating text-based plagiarism detection using gpus
MAC Jiffriya, MACA Jahan, H Gamaarachchi, RG Ragel
2015 IEEE 10th International Conference on Industrial and Information …, 2015
Breaking Speck cryptosystem using correlation power analysis attack
H Gamaarachchi, H Ganegoda, R Ragel
Journal of the National Science Foundation of Sri Lanka 45 (4), 393-404, 2017
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses
JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ...
Bioinformatics 38 (5), 1443-1446, 2022
Generalized and hybrid fast-ica implementation using gpu
TN Kumara, H Gamaarachchi, G Prathap, R Ragel
2016 Sixteenth International Conference on Advances in ICT for Emerging …, 2016
Swaram: Portable energy and cost efficient embedded system for genomic processing
RP Mohanty, H Gamaarachchi, A Lambert, S Parameswaran
ACM Transactions on Embedded Computing Systems (TECS) 18 (5s), 1-24, 2019
The a to z of building a testbed for power analysis attacks
H Gamaarachchi, H Ganegoda, R Ragel
2015 IEEE 10th International Conference on Industrial and Information …, 2015
Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices
PJ Shih, H Saadat, S Parameswaran, H Gamaarachchi
arXiv preprint arXiv:2211.07340, 2022
Optimization of plagiarism detection using vector space model on CUDA architecture
AC Jiffriya Mohamed, MAC Akmal Jahan, G Hasindu, GR Roshan
Inder Science Publishers, 2022
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference
J Gong, H Saadat, H Gamaarachchi, H Javaid, XS Hu, S Parameswaran
arXiv preprint arXiv:2209.04161, 2022
DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing
A Senanayake, H Gamaarachchi, D Herath, R Ragel
bioRxiv, 2022
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