| Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ... Nature communications 11 (1), 6272, 2020 | 213 | 2020 |
| Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ... Science advances 8 (9), eabm5386, 2022 | 67 | 2022 |
| GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ... BMC bioinformatics 21, 1-13, 2020 | 59 | 2020 |
| Autonomic trust management in cloud-based and highly dynamic IoT applications S Namal, H Gamaarachchi, G MyoungLee, TW Um 2015 ITU Kaleidoscope: Trust in the Information Society (K-2015), 1-8, 2015 | 59 | 2015 |
| Fast nanopore sequencing data analysis with SLOW5 H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ... Nature biotechnology 40 (7), 1026-1029, 2022 | 38 | 2022 |
| Seed-and-vote based in-memory accelerator for dna read mapping AF Laguna, H Gamaarachchi, X Yin, M Niemier, S Parameswaran, XS Hu Proceedings of the 39th International Conference on Computer-Aided Design, 1-9, 2020 | 32 | 2020 |
| Genopo: a nanopore sequencing analysis toolkit for portable Android devices H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ... Communications Biology 3 (1), 538, 2020 | 24* | 2020 |
| Featherweight long read alignment using partitioned reference indexes H Gamaarachchi, S Parameswaran, MA Smith Scientific reports 9 (1), 4318, 2019 | 22 | 2019 |
| Power analysis based side channel attack H Gamaarachchi, H Ganegoda arXiv preprint arXiv:1801.00932, 2018 | 21 | 2018 |
| Efficient real-time selective genome sequencing on resource-constrained devices PJ Shih, H Saadat, S Parameswaran, H Gamaarachchi GigaScience 12, giad046, 2023 | 14 | 2023 |
| InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ... Bioinformatics 38 (5), 1443-1446, 2022 | 12 | 2022 |
| DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing A Senanayake, H Gamaarachchi, D Herath, R Ragel BMC bioinformatics 24 (1), 31, 2023 | 11 | 2023 |
| Accelerating correlation power analysis using graphics processing units (gpus) H Gamaarachchi, R Ragel, D Jayasinghe 7th International Conference on Information and Automation for …, 2014 | 11 | 2014 |
| Accelerating text-based plagiarism detection using GPUs MAC Jiffriya, MACA Jahan, H Gamaarachchi, RG Ragel 2015 IEEE 10th International Conference on Industrial and Information …, 2015 | 8 | 2015 |
| Swaram: Portable energy and cost efficient embedded system for genomic processing RP Mohanty, H Gamaarachchi, A Lambert, S Parameswaran ACM Transactions on Embedded Computing Systems (TECS) 18 (5s), 1-24, 2019 | 7 | 2019 |
| Breaking Speck cryptosystem using correlation power analysis attack. H Gamaarachchi, H Ganegoda, R Ragel Journal of the National Science Foundation of Sri Lanka 45 (2), 2017 | 7 | 2017 |
| Cross layer design using hw/sw co-design and hls to accelerate chaining in genomic analysis K Liyanage, H Gamaarachchi, R Ragel, S Parameswaran IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, 2023 | 5 | 2023 |
| Squigulator: simulation of nanopore sequencing signal data with tunable noise parameters H Gamaarachchi, JM Ferguson, H Samarakoon, K Liyanage, IW Deveson bioRxiv, 2023.05. 09.539953, 2023 | 5 | 2023 |
| Cache friendly optimisation of de bruijn graph based local re-assembly in variant calling H Gamaarachchi, A Bayat, B Gaeta, S Parameswaran IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2018 | 5 | 2018 |
| Generalized and hybrid fast-ica implementation using gpu TN Kumara, H Gamaarachchi, G Prathap, R Ragel 2016 Sixteenth International Conference on Advances in ICT for Emerging …, 2016 | 5 | 2016 |
Ira DevesonGarvan Institute of Medical ResearchVerified email at garvan.org.au
