Mark Chaisson
Title
Cited by
Cited by
Year
STAR: ultrafast universal RNA-seq aligner
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
Bioinformatics 29 (1), 15-21, 2013
143852013
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
13192015
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
MJ Chaisson, G Tesler
BMC bioinformatics 13 (1), 238, 2012
8272012
Resolving the complexity of the human genome using single-molecule sequencing
MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ...
Nature 517 (7536), 608-611, 2015
5602015
Short read fragment assembly of bacterial genomes
MJ Chaisson, PA Pevzner
Genome research 18 (2), 324-330, 2008
5402008
De novo fragment assembly with short mate-paired reads: Does the read length matter?
MJ Chaisson, D Brinza, PA Pevzner
Genome research 19 (2), 336-346, 2009
3532009
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
3182016
Fragment assembly with short reads
M Chaisson, P Pevzner, H Tang
Bioinformatics 20 (13), 2067-2074, 2004
2662004
Genetic variation and the de novo assembly of human genomes
MJP Chaisson, RK Wilson, EE Eichler
Nature Reviews Genetics 16 (11), 627-640, 2015
2612015
Long-read sequence assembly of the gorilla genome
D Gordon, J Huddleston, MJP Chaisson, CM Hill, ZN Kronenberg, ...
Science 352 (6281), 2016
2492016
Reconstructing complex regions of genomes using long-read sequencing technology
J Huddleston, S Ranade, M Malig, F Antonacci, M Chaisson, L Hon, ...
Genome research 24 (4), 688-696, 2014
2262014
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
2212019
Discovery and genotyping of structural variation from long-read haploid genome sequence data
J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ...
Genome research 27 (5), 677-685, 2017
1992017
High-resolution comparative analysis of great ape genomes
ZN Kronenberg, IT Fiddes, D Gordon, S Murali, S Cantsilieris, ...
Science 360 (6393), 2018
1452018
Assembly of long error-prone reads using de Bruijn graphs
Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner
Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016
992016
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers
P Medvedev, S Pham, M Chaisson, G Tesler, P Pevzner
Journal of Computational Biology 18 (11), 1625-1634, 2011
852011
Sequence assembly and consensus sequence determination
A Klammer, S Tang, M Chaisson, J Sorenson, C Chen-Shan
US Patent App. 13/034,233, 2011
752011
Long-read sequence and assembly of segmental duplications
MR Vollger, PC Dishuck, M Sorensen, AME Welch, V Dang, ...
Nature methods 16 (1), 88-94, 2019
512019
Microinversions in mammalian evolution
MJ Chaisson, BJ Raphael, PA Pevzner
Proceedings of the National Academy of Sciences 103 (52), 19824-19829, 2006
452006
Sequence assembly and consensus sequence determination
M Chaisson
US Patent 9,165,109, 2015
442015
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