| Automated 3D structure composition for large RNAs M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ... Nucleic Acids Research 40 (14), e112-e112, 2012 | 723 | 2012 |
| New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016 | 199 | 2016 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 193 | 2017 |
| RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015 | 188 | 2015 |
| RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures M Popenda, M Szachniuk, M Blazewicz, S Wasik, EK Burke, J Blazewicz, ... BMC bioinformatics 11, 1-12, 2010 | 178 | 2010 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 123 | 2020 |
| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 111 | 2018 |
| RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures M Popenda, M Błażewicz, M Szachniuk, RW Adamiak Nucleic Acids Research 36 (suppl_1), D386-D391, 2008 | 95 | 2008 |
| RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014 | 83 | 2014 |
| High salt solution structure of a left-handed RNA double helix M Popenda, J Milecki, RW Adamiak Nucleic acids research 32 (13), 4044-4054, 2004 | 63 | 2004 |
| Crystal structure of 2′-O-Me (CGCGCG) 2, an RNA duplex at 1.30 Å resolution. Hydration pattern of 2′-O-methylated RNA DA Adamiak, J Milecki, M Popenda, RW Adamiak, Z Dauter, ... Nucleic acids research 25 (22), 4599-4607, 1997 | 61 | 1997 |
| Automated 3D RNA structure prediction using the RNAComposer method for riboswitches1 KJ Purzycka, M Popenda, M Szachniuk, M Antczak, P Lukasiak, ... Methods in enzymology 553, 3-34, 2015 | 58 | 2015 |
| Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r (CGCGCG) 2 and 2′-O-Me (CGCGCG) 2 under low salt conditions M Popenda, E Biala, J Milecki, RW Adamiak Nucleic acids research 25 (22), 4589-4598, 1997 | 55 | 1997 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 43 | 2018 |
| MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22, 457-473, 2014 | 41 | 2014 |
| An Effect of Various Nitrogen Forms Used as Fertilizer on Lupinus albus L. Yield and Protein, Alkaloid and α‐Galactosides Content D Ciesiołka, M Muzquiz, C Burbano, P Altares, MM Pedrosa, W Wysocki, ... Journal of Agronomy and Crop Science 191 (6), 458-463, 2005 | 40 | 2005 |
| New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16, 1-12, 2015 | 38 | 2015 |
| RNAlyzer—novel approach for quality analysis of RNA structural models P Lukasiak, M Antczak, T Ratajczak, JM Bujnicki, M Szachniuk, ... Nucleic Acids Research 41 (12), 5978-5990, 2013 | 30 | 2013 |
| RNAssess—a web server for quality assessment of RNA 3D structures P Lukasiak, M Antczak, T Ratajczak, M Szachniuk, M Popenda, ... Nucleic Acids Research 43 (W1), W502-W506, 2015 | 28 | 2015 |
| Topology-based classification of tetrads and quadruplex structures M Popenda, J Miskiewicz, J Sarzynska, T Zok, M Szachniuk Bioinformatics 36 (4), 1129-1134, 2020 | 27 | 2020 |
Szymon WasikGoogle CloudVerified email at google.com
