Se-Ran Jun
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Insights from 20 years of bacterial genome sequencing
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15 (2), 141-161, 2015
Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
GE Sims, SR Jun, GA Wu, SH Kim
Proceedings of the National Academy of Sciences 106 (8), 2677-2682, 2009
Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution
SR Jun, GE Sims, GA Wu, SH Kim
Proceedings of the National Academy of Sciences 107 (1), 133-138, 2010
Global mapping of the protein structure space and application in structure-based inference of protein function
J Hou, SR Jun, C Zhang, SH Kim
Proceedings of the National Academy of Sciences 102 (10), 3651-3656, 2005
Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method
GA Wu, SR Jun, GE Sims, SH Kim
Proceedings of the National Academy of Sciences 106 (31), 12826-12831, 2009
Global genomic epidemiology of Salmonella enterica serovar Typhimurium DT104
P Leekitcharoenphon, RS Hendriksen, S Le Hello, FX Weill, ...
Applied and environmental microbiology 82 (8), 2516-2526, 2016
Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions
GE Sims, SR Jun, GA Wu, SH Kim
Proceedings of the National Academy of Sciences 106 (40), 17077-17082, 2009
Ebolavirus comparative genomics
SR Jun, MR Leuze, I Nookaew, EC Uberbacher, M Land, Q Zhang, ...
FEMS microbiology reviews 39 (5), 764-778, 2015
Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment
CM Timm, AG Campbell, SM Utturkar, SR Jun, RE Parales, WA Tan, ...
Frontiers in microbiology 6, 1118, 2015
Diversity of Pseudomonas genomes, including Populus-associated isolates, as revealed by comparative genome analysis
SR Jun, TM Wassenaar, I Nookaew, L Hauser, V Wanchai, M Land, ...
Applied and Environmental Microbiology 82 (1), 375-383, 2016
Case of microcephaly after congenital infection with Asian lineage Zika virus, Thailand
T Wongsurawat, N Athipanyasilp, P Jenjaroenpun, SR Jun, B Kaewnapan, ...
Emerging infectious diseases 24 (9), 1758, 2018
Quality scores for 32,000 genomes
ML Land, D Hyatt, SR Jun, GH Kora, LJ Hauser, O Lukjancenko, ...
Standards in genomic sciences 9 (1), 1-10, 2014
Viral phylogenomics using an alignment-free method: A three-step approach to determine optimal length of k-mer
Q Zhang, SR Jun, M Leuze, D Ussery, I Nookaew
Scientific reports 7 (1), 1-13, 2017
PanFP: pangenome-based functional profiles for microbial communities
SR Jun, MS Robeson, LJ Hauser, CW Schadt, AA Gorin
BMC research notes 8 (1), 1-7, 2015
Abiotic stresses shift belowground Populus-associated bacteria toward a core stress microbiome
CM Timm, KR Carter, AA Carrell, SR Jun, SS Jawdy, JM Vélez, LE Gunter, ...
MSystems 3 (1), 2018
Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?
SR Jun, TM Wassenaar, V Wanchai, P Patumcharoenpol, I Nookaew, ...
Bmc Bioinformatics 18 (14), 81-92, 2017
Sample storage conditions induce post-collection biases in microbiome profiles
SV Jenkins, KB Vang, A Gies, RJ Griffin, SR Jun, I Nookaew, RPM Dings
BMC microbiology 18 (1), 227, 2018
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016
D Alkam, P Jenjaroenpun, T Wongsurawat, Z Udaondo, ...
Infection, Genetics and Evolution 75, 103965, 2019
Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes
A Cabal, SR Jun, P Jenjaroenpun, V Wanchai, I Nookaew, ...
Microbial ecology 76 (3), 801-813, 2018
Assessment of genome annotation using gene function similarity within the gene neighborhood
SR Jun, I Nookaew, L Hauser, A Gorin
BMC bioinformatics 18 (1), 1-11, 2017
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