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Federico Agostini
Federico Agostini
Science for Life Laboratories and Karolinska Institutet
Verified email at scilifelab.se - Homepage
Title
Cited by
Cited by
Year
DnaK functions as a central hub in the E. coli chaperone network
G Calloni, T Chen, SM Schermann, H Chang, P Genevaux, F Agostini, ...
Cell reports 1 (3), 251-264, 2012
3662012
Predicting protein associations with long noncoding RNAs
M Bellucci, F Agostini, M Masin, GG Tartaglia
Nature methods 8 (6), 444-445, 2011
3302011
catRAPID omics: a web server for large-scale prediction of protein–RNA interactions
F Agostini, A Zanzoni, P Klus, D Marchese, D Cirillo, GG Tartaglia
Bioinformatics 29 (22), 2928-2930, 2013
2292013
Sequence-based prediction of protein solubility
F Agostini, M Vendruscolo, GG Tartaglia
Journal of molecular biology 421 (2-3), 237-241, 2012
1152012
Heteromeric RNP assembly at LINEs controls lineage-specific RNA processing
J Attig, F Agostini, C Gooding, AM Chakrabarti, A Singh, N Haberman, ...
Cell 174 (5), 1067-1081. e17, 2018
972018
Neurodegenerative diseases: quantitative predictions of protein–RNA interactions
D Cirillo, F Agostini, P Klus, D Marchese, S Rodriguez, B Bolognesi, ...
Rna 19 (2), 129-140, 2013
762013
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ...
Nature Communications 11 (1), 1018, 2020
752020
Disulfide bonds reduce the toxicity of the amyloid fibrils formed by an extracellular protein
MF Mossuto, B Bolognesi, B Guixer, A Dhulesia, F Agostini, JR Kumita, ...
Angewandte Chemie 123 (31), 7186-7189, 2011
672011
cc SOL omics : a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli
F Agostini, D Cirillo, CM Livi, R Delli Ponti, GG Tartaglia
Bioinformatics 30 (20), 2975-2977, 2014
582014
X-inactivation: quantitative predictions of protein interactions in the Xist network
F Agostini, D Cirillo, B Bolognesi, GG Tartaglia
Nucleic acids research 41 (1), e31-e31, 2013
532013
Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
A Zanzoni, D Marchese, F Agostini, B Bolognesi, D Cirillo, M Botta-Orfila, ...
Nucleic acids research 41 (22), 9987-9998, 2013
512013
The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities
P Klus, B Bolognesi, F Agostini, D Marchese, A Zanzoni, GG Tartaglia
Bioinformatics 30 (11), 1601-1608, 2014
492014
GPSeq reveals the radial organization of chromatin in the cell nucleus
G Girelli, J Custodio, T Kallas, F Agostini, E Wernersson, B Spanjaard, ...
Nature biotechnology 38 (10), 1184-1193, 2020
472020
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture
E Gelali, G Girelli, M Matsumoto, E Wernersson, J Custodio, A Mota, ...
Nature communications 10 (1), 1636, 2019
432019
Constitutive patterns of gene expression regulated by RNA-binding proteins
D Cirillo, D Marchese, F Agostini, CM Livi, T Botta-Orfila, GG Tartaglia
Genome biology 15 (1), 1-13, 2014
412014
Molecular landscape of the interaction between the urease accessory proteins UreE and UreG
A Merloni, O Dobrovolska, B Zambelli, F Agostini, M Bazzani, F Musiani, ...
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (9), 1662-1674, 2014
332014
SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences
F Agostini, D Cirillo, RD Ponti, GG Tartaglia
BMC genomics 15, 1-9, 2014
312014
Predictions of protein–RNA interactions
D Cirillo, F Agostini, GG Tartaglia
Wiley Interdisciplinary Reviews: Computational Molecular Science 3 (2), 161-175, 2013
292013
Discovery of protein–RNA networks
D Cirillo, CM Livi, F Agostini, GG Tartaglia
Molecular bioSystems 10 (7), 1632-1642, 2014
242014
Somatic copy number alterations in human cancers: An analysis of publicly available data from the cancer genome atlas
L Harbers, F Agostini, M Nicos, D Poddighe, M Bienko, N Crosetto
Frontiers in oncology 11, 700568, 2021
192021
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Articles 1–20