| Control of DNA replication timing in the 3D genome C Marchal, J Sima, DM Gilbert Nature Reviews Molecular Cell Biology 20 (12), 721-737, 2019 | 223 | 2019 |
| Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert Genome research 25 (8), 1104-1113, 2015 | 176 | 2015 |
| Identifying cis elements for spatiotemporal control of mammalian DNA replication J Sima, A Chakraborty, V Dileep, M Michalski, KN Klein, NP Holcomb, ... Cell 176 (4), 816-830. e18, 2019 | 162 | 2019 |
| Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq C Marchal, T Sasaki, D Vera, K Wilson, J Sima, JC Rivera-Mulia, ... Nature protocols 13 (5), 819-839, 2018 | 145 | 2018 |
| Complex correlations: replication timing and mutational landscapes during cancer and genome evolution J Sima, DM Gilbert Current opinion in genetics & development 25, 93-100, 2014 | 83 | 2014 |
| Large-scale chromatin structure–function relationships during the cell cycle and development: insights from replication timing V Dileep, JC Rivera-Mulia, J Sima, DM Gilbert Cold Spring Harbor symposia on quantitative biology 80, 53-63, 2015 | 69 | 2015 |
| Local rewiring of genome–nuclear lamina interactions by transcription L Brueckner, PA Zhao, T van Schaik, C Leemans, J Sima, ... The EMBO Journal 39 (6), e103159, 2020 | 66 | 2020 |
| DNA replication timing alterations identify common markers between distinct progeroid diseases JC Rivera-Mulia, R Desprat, C Trevilla-Garcia, D Cornacchia, H Schwerer, ... Proceedings of the National Academy of Sciences 114 (51), E10972-E10980, 2017 | 46 | 2017 |
| Cellular senescence induces replication stress with almost no affect on DNA replication timing JC Rivera-Mulia, H Schwerer, E Besnard, R Desprat, C Trevilla-Garcia, ... Cell Cycle 17 (13), 1667-1681, 2018 | 18 | 2018 |
| Many paths lead chromatin to the nuclear periphery MR Gordon, BD Pope, J Sima, DM Gilbert BioEssays 37 (8), 862-866, 2015 | 18 | 2015 |
| Bacterial artificial chromosomes establish replication timing and sub-nuclear compartment de novo as extra-chromosomal vectors J Sima, DA Bartlett, MR Gordon, DM Gilbert Nucleic acids research 46 (4), 1810-1820, 2018 | 7 | 2018 |
| Identification of cis elements for spatio-temporal control of DNA replication J Sima, A Chakraborty, V Dileep, M Michalski, JC Rivera-Mulia, ... bioRxiv, 285650, 2018 | 3 | 2018 |
| Repli-seq: genome-wide analysis of replication timing by next-generation sequencing C Marchal, T Sasaki, D Vera, K Wilson, J Sima, JC Rivera-Mulia, ... | 1 | 2017 |
| Activation of locus coeruleus noradrenergic neurons rapidly drives homeostatic sleep pressure D Silverman, C Chen, S Chang, L Bui, Y Zhang, R Raghavan, A Jiang, ... bioRxiv, 2024.02. 29.582852, 2024 | | 2024 |
| Genetic Dissection of Cis-elements in Spatio-temporal Control of DNA Replication J Sima The Florida State University, 2018 | | 2018 |
