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Konstantinos Tsirigos, PhD Bioinformatics
Konstantinos Tsirigos, PhD Bioinformatics
DTU Biosustain
Verified email at dtu.dk - Homepage
Title
Cited by
Cited by
Year
SignalP 5.0 improves signal peptide predictions using deep neural networks
JJ Almagro Armenteros, KD Tsirigos, CK Sřnderby, TN Petersen, ...
Nature biotechnology 37 (4), 420-423, 2019
35762019
SignalP 6.0 predicts all five types of signal peptides using protein language models
F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ...
Nature biotechnology 40 (7), 1023-1025, 2022
10052022
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic acids research 43 (W1), W401-W407, 2015
8892015
DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks
J Hallgren, KD Tsirigos, MD Pedersen, JJ Almagro Armenteros, ...
BioRxiv, 2022.04. 08.487609, 2022
4362022
DisProt 7.0: a major update of the database of disordered proteins
D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ...
Nucleic acids research 45 (D1), D219-D227, 2017
3292017
A reference map of potential determinants for the human serum metabolome
N Bar, T Korem, O Weissbrod, D Zeevi, D Rothschild, S Leviatan, ...
Nature 588 (7836), 135-140, 2020
2742020
Combined prediction of Tat and Sec signal peptides with hidden Markov models
PG Bagos, EP Nikolaou, TD Liakopoulos, KD Tsirigos
Bioinformatics 26 (22), 2811-2817, 2010
2602010
A brief history of protein sorting prediction
H Nielsen, KD Tsirigos, S Brunak, G von Heijne
The protein journal 38, 200-216, 2019
1882019
Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model
PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas
Journal of proteome research 7 (12), 5082-5093, 2008
1382008
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
F Quaglia, B Mészáros, E Salladini, A Hatos, R Pancsa, LB Chemes, ...
Nucleic acids research 50 (D1), D480-D487, 2022
1252022
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt
D Ochoa, A Hercules, M Carmona, D Suveges, J Baker, C Malangone, ...
Nucleic acids research 51 (D1), D1353-D1359, 2023
1092023
Prediction of signal peptides in archaea
PG Bagos, KD Tsirigos, SK Plessas, TD Liakopoulos, SJ Hamodrakas
Protein Engineering, Design & Selection 22 (1), 27-35, 2009
1022009
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins
S Hayat, C Peters, N Shu, KD Tsirigos, A Elofsson
Bioinformatics 32 (10), 1571-1573, 2016
862016
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins
KD Tsirigos, A Elofsson, PG Bagos
Bioinformatics 32 (17), i665-i671, 2016
852016
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria
KD Tsirigos, PG Bagos, SJ Hamodrakas
Nucleic acids research 39 (suppl_1), D324-D331, 2010
682010
Improved topology prediction using the terminal hydrophobic helices rule
C Peters, KD Tsirigos, N Shu, A Elofsson
Bioinformatics 32 (8), 1158-1162, 2016
562016
Four groups of type 2 diabetes contribute to the etiological and clinical heterogeneity in newly diagnosed individuals: An IMI DIRECT study
A Wesolowska-Andersen, CA Brorsson, R Bizzotto, A Mari, A Tura, ...
Cell Reports Medicine 3 (1), 2022
532022
A guideline to proteome‐wide α‐helical membrane protein topology predictions
KD Tsirigos, A Hennerdal, L Käll, A Elofsson
Proteomics 12 (14), 2282-2294, 2012
412012
Prediction of cell wall sorting signals in gram-positive bacteria with a hidden markov model: application to complete genomes
ZI Litou, PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas
Journal of bioinformatics and computational biology 6 (02), 387-401, 2008
382008
Pharmacogenomics of GLP-1 receptor agonists: a genome-wide analysis of observational data and large randomised controlled trials
AY Dawed, A Mari, A Brown, TJ McDonald, L Li, S Wang, MG Hong, ...
The Lancet Diabetes & Endocrinology 11 (1), 33-41, 2023
372023
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