Konstantinos Tsirigos
Konstantinos Tsirigos
DTU - Technical University of Denmark
Verifierad e-postadress på bioinformatics.dtu.dk
TitelCiteras avÅr
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
KD Tsirigos, C Peters, N Shu, L Käll, A Elofsson
Nucleic acids research 43 (W1), W401-W407, 2015
Combined prediction of Tat and Sec signal peptides with hidden Markov models
PG Bagos, EP Nikolaou, TD Liakopoulos, KD Tsirigos
Bioinformatics 26 (22), 2811-2817, 2010
Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model
PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas
Journal of proteome research 7 (12), 5082-5093, 2008
DisProt 7.0: a major update of the database of disordered proteins
D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ...
Nucleic acids research 45 (D1), D219-D227, 2016
Prediction of signal peptides in archaea
PG Bagos, KD Tsirigos, SK Plessas, TD Liakopoulos, SJ Hamodrakas
Protein Engineering, Design & Selection 22 (1), 27-35, 2008
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria
KD Tsirigos, PG Bagos, SJ Hamodrakas
Nucleic acids research 39 (suppl_1), D324-D331, 2010
A guideline to proteome‐wide α‐helical membrane protein topology predictions
KD Tsirigos, A Hennerdal, L Käll, A Elofsson
Proteomics 12 (14), 2282-2294, 2012
Prediction of cell wall sorting signals in gram-positive bacteria with a hidden markov model: application to complete genomes
ZI Litou, PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas
Journal of bioinformatics and computational biology 6 (02), 387-401, 2008
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins
S Hayat, C Peters, N Shu, KD Tsirigos, A Elofsson
Bioinformatics 32 (10), 1571-1573, 2016
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins
KD Tsirigos, A Elofsson, PG Bagos
Bioinformatics 32 (17), i665-i671, 2016
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins
GN Tsaousis, KD Tsirigos, XD Andrianou, TD Liakopoulos, PG Bagos, ...
Bioinformatics 26 (19), 2490-2492, 2010
Improved topology prediction using the terminal hydrophobic helices rule
C Peters, KD Tsirigos, N Shu, A Elofsson
Bioinformatics 32 (8), 1158-1162, 2015
CW-PRED: a HMM-based method for the classification of cell wall-anchored proteins of Gram-positive bacteria
DK Fimereli, KD Tsirigos, ZI Litou, TD Liakopoulos, PG Bagos, ...
Hellenic Conference on Artificial Intelligence, 285-290, 2012
Large tilts in transmembrane helices can be induced during tertiary structure formation
M Virkki, C Boekel, K Illergård, C Peters, N Shu, KD Tsirigos, A Elofsson, ...
Journal of molecular biology 426 (13), 2529-2538, 2014
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat
PC Babbitt, PG Bagos, A Bairoch, A Bateman, A Chatonnet, MJ Chen, ...
Database 2015, 2015
GWAR: robust analysis and meta-analysis of genome-wide association studies
NL Dimou, KD Tsirigos, A Elofsson, PG Bagos
Bioinformatics 33 (10), 1521-1527, 2017
Extending hidden Markov models to allow conditioning on previous observations
IA Tamposis, MC Theodoropoulou, KD Tsirigos, PG Bagos
Journal of Bioinformatics and Computational Biology, 1850019, 2018
Topology of membrane proteins—predictions, limitations and variations
KD Tsirigos, S Govindarajan, C Bassot, Å Västermark, J Lamb, N Shu, ...
Current opinion in structural biology 50, 9-17, 2018
Bioinformatics Methods for Topology Prediction of Membrane Proteins
K Tsirigos
Department of Biochemistry and Biophysics, Stockholm University, 2017
Semi-supervised learning of Hidden Markov Models for biological sequence analysis
IA Tamposis, KD Tsirigos, MC Theodoropoulou, PI Kontou, PG Bagos
Bioinformatics, 2018
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Artiklar 1–20