| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16395 | 2019 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1014 | 2018 |
| US immigration westernizes the human gut microbiome P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ... Cell 175 (4), 962-972. e10, 2018 | 699 | 2018 |
| Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell host & microbe 25 (6), 789-802. e5, 2019 | 575 | 2019 |
| Captivity humanizes the primate microbiome JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ... Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016 | 503 | 2016 |
| Stable engraftment of Bifidobacterium longum AH1206 in the human gut depends on individualized features of the resident microbiome MX Maldonado-Gómez, I Martínez, F Bottacini, A O’Callaghan, M Ventura, ... Cell host & microbe 20 (4), 515-526, 2016 | 447 | 2016 |
| Evaluating the information content of shallow shotgun metagenomics B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... Msystems 3 (6), 10.1128/msystems. 00069-18, 2018 | 330 | 2018 |
| Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice Q Le Bastard, T Ward, D Sidiropoulos, BM Hillmann, CL Chun, ... Scientific reports 8 (1), 6219, 2018 | 135 | 2018 |
| An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel disease and rheumatoid arthritis: a cross-sectional study DA Muñiz Pedrogo, J Chen, B Hillmann, P Jeraldo, G Al-Ghalith, V Taneja, ... Inflammatory bowel diseases 25 (5), 902-913, 2019 | 92 | 2019 |
| Personalized Microbiome Class Students; et al. Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell Host Microbe 25 (6), 789-802, 2019 | 87 | 2019 |
| Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks P Vangay, BM Hillmann, D Knights Gigascience 8 (5), giz042, 2019 | 81 | 2019 |
| Turkers, scholars," arafat" and" peace" cultural communities and algorithmic gold standards S Sen, ME Giesel, R Gold, B Hillmann, M Lesicko, S Naden, J Russell, ... Proceedings of the 18th acm conference on computer supported cooperative …, 2015 | 72 | 2015 |
| SHI7 is a self-learning pipeline for multipurpose short-read DNA quality control GA Al-Ghalith, B Hillmann, K Ang, R Shields-Cutler, D Knights Msystems 3 (3), 10.1128/msystems. 00202-17, 2018 | 65 | 2018 |
| SHOGUN: a modular, accurate and scalable framework for microbiome quantification B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, R Knight, D Knights Bioinformatics 36 (13), 4088-4090, 2020 | 47 | 2020 |
| Personalized Microbiome Class Students, Walter J, Menon R, Koecher K, Knights D. 2019. Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell Host Microbe 25 (6), 789-802, 0 | 37 | |
| Wikibrain: democratizing computation on wikipedia S Sen, TJJ Li, WB Team, B Hecht Proceedings of The International Symposium on Open Collaboration, 1-10, 2014 | 33 | 2014 |
| QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints 6: e27295v2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... | 30 | 2018 |
| Bacterial communities associated with wood rot fungi that use distinct decomposition mechanisms IU Haq, B Hillmann, M Moran, S Willard, D Knights, KR Fixen, JS Schilling ISME communications 2 (1), 26, 2022 | 26 | 2022 |
| Saliva testing is accurate for early-stage and presymptomatic COVID-19 AJ Johnson, S Zhou, SL Hoops, B Hillmann, M Schomaker, R Kincaid, ... Microbiology spectrum 9 (1), 10.1128/spectrum. 00086-21, 2021 | 21 | 2021 |
| Gut microbiome signatures of nursing home residents carrying Enterobacteria Producing Extended-spectrum β-lactamases Q LE BASTARD, G Chapelet, G Birgand, BM Hillmann, F Javaudin, ... | 20 | 2020 |
