| Andromeda: a peptide search engine integrated into the MaxQuant environment J Cox, N Neuhauser, A Michalski, RA Scheltema, JV Olsen, M Mann Journal of proteome research 10 (4), 1794-1805, 2011 | 3791 | 2011 |
| The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer RA Scheltema, JP Hauschild, O Lange, D Hornburg, E Denisov, E Damoc, ... Molecular & Cellular Proteomics 13 (12), 3698-3708, 2014 | 275 | 2014 |
| PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling Analytical chemistry 83 (7), 2786-2793, 2011 | 269 | 2011 |
| System-wide molecular evidence for phenotypic buffering in Arabidopsis J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ... Nature genetics 41 (2), 166-167, 2009 | 259 | 2009 |
| Direct proteomic quantification of the secretome of activated immune cells F Meissner, RA Scheltema, HJ Mollenkopf, M Mann Science 340 (6131), 475-478, 2013 | 171 | 2013 |
| Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification F Liu, P Lössl, R Scheltema, R Viner, AJR Heck Nature communications 8 (1), 1-8, 2017 | 139 | 2017 |
| Time‐and compartment‐resolved proteome profiling of the extracellular niche in lung injury and repair HB Schiller, IE Fernandez, G Burgstaller, C Schaab, RA Scheltema, ... Molecular systems biology 11 (7), 819, 2015 | 121 | 2015 |
| Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4 C Benda, J Ebert, RA Scheltema, HB Schiller, M Baumgärtner, F Bonneau, ... Molecular cell 56 (1), 43-54, 2014 | 117 | 2014 |
| Metabolomic profiling using Orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: a method with wide applicability to analysis of biomolecules A Kamleh, MP Barrett, D Wildridge, RJS Burchmore, RA Scheltema, ... Rapid Communications in Mass Spectrometry: An International Journal Devoted …, 2008 | 110 | 2008 |
| Probabilistic assignment of formulas to mass peaks in metabolomics experiments S Rogers, RA Scheltema, M Girolami, R Breitling Bioinformatics 25 (4), 512-518, 2009 | 104 | 2009 |
| Metabolomics to unveil and understand phenotypic diversity between pathogen populations R t'Kindt, RA Scheltema, A Jankevics, K Brunker, S Rijal, JC Dujardin, ... PLoS Negl Trop Dis 4 (11), e904, 2010 | 95 | 2010 |
| Spacer capture and integration by a type IF Cas1–Cas2-3 CRISPR adaptation complex RD Fagerlund, ME Wilkinson, O Klykov, A Barendregt, FG Pearce, ... Proceedings of the National Academy of Sciences 114 (26), E5122-E5128, 2017 | 80 | 2017 |
| Metabolomic characterization of the salt stress response in Streptomyces coelicolor S Kol, ME Merlo, RA Scheltema, M de Vries, RJ Vonk, NA Kikkert, ... Applied and environmental microbiology 76 (8), 2574-2581, 2010 | 67 | 2010 |
| Implementation of ultraviolet photodissociation on a benchtop Q exactive mass spectrometer and its application to phosphoproteomics KL Fort, A Dyachenko, CM Potel, E Corradini, F Marino, A Barendregt, ... Analytical chemistry 88 (4), 2303-2310, 2016 | 64 | 2016 |
| Increasing the mass accuracy of high‐resolution LC‐MS data using background ions–a case study on the LTQ‐Orbitrap RA Scheltema, A Kamleh, D Wildridge, C Ebikeme, DG Watson, ... Proteomics 8 (22), 4647-4656, 2008 | 63 | 2008 |
| Simple data-reduction method for high-resolution LC–MS data in metabolomics RA Scheltema, S Decuypere, JC Dujardin, DG Watson, RC Jansen, ... Bioanalysis 1 (9), 1551-1557, 2009 | 60 | 2009 |
| Efficient and robust proteome-wide approaches for cross-linking mass spectrometry O Klykov, B Steigenberger, S Pektaş, D Fasci, AJR Heck, RA Scheltema Nature protocols 13 (12), 2964-2990, 2018 | 58 | 2018 |
| Towards an unbiased metabolic profiling of protozoan parasites: optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis R t’Kindt, A Jankevics, RA Scheltema, L Zheng, DG Watson, JC Dujardin, ... Analytical and bioanalytical chemistry 398 (5), 2059-2069, 2010 | 57 | 2010 |
| A framework for intelligent data acquisition and real-time database searching for shotgun proteomics J Graumann, RA Scheltema, Y Zhang, J Cox, M Mann Molecular & Cellular Proteomics 11 (3), M111. 013185, 2012 | 56 | 2012 |
| SprayQc: a real-time LC–MS/MS quality monitoring system to maximize uptime using off the shelf components RA Scheltema, M Mann Journal of proteome research 11 (6), 3458-3466, 2012 | 53 | 2012 |
Matthias MannMax Planck Institute of Biochemistry, Munich and CPR, University of CopenhagenVerified email at biochem.mpg.de
