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Travis Gagie
Travis Gagie
Associate Professor at Dalhousie University
Verifierad e-postadress på dal.ca
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Lightweight data indexing and compression in external memory
P Ferragina, T Gagie, G Manzini
Algorithmica 63 (3), 707-730, 2012
1372012
Efficient fully-compressed sequence representations
J Barbay, F Claude, T Gagie, G Navarro, Y Nekrich
Algorithmica 69 (1), 232-268, 2014
121*2014
New algorithms on wavelet trees and applications to information retrieval
T Gagie, G Navarro, SJ Puglisi
Theoretical Computer Science 426, 25-41, 2012
1212012
A faster grammar-based self-index
T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi
International Conference on Language and Automata Theory and Applications …, 2012
1072012
Fully functional suffix trees and optimal text searching in BWT-runs bounded space
T Gagie, G Navarro, N Prezza
Journal of the ACM (JACM) 67 (1), 1-54, 2020
1002020
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
1002017
Range quantile queries: Another virtue of wavelet trees
T Gagie, SJ Puglisi, A Turpin
International Symposium on String Processing and Information Retrieval, 1-6, 2009
942009
Optimal-time text indexing in BWT-runs bounded space
T Gagie, G Navarro, N Prezza
Proceedings of the Twenty-Ninth Annual ACM-SIAM Symposium on Discrete …, 2018
842018
LZ77-based self-indexing with faster pattern matching
T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi
Latin American Symposium on Theoretical Informatics, 731-742, 2014
832014
Wheeler graphs: A framework for BWT-based data structures
T Gagie, G Manzini, J Sirén
Theoretical computer science 698, 67-78, 2017
812017
Colored range queries and document retrieval
T Gagie, J Kärkkäinen, G Navarro, SJ Puglisi
Theoretical Computer Science 483, 36-50, 2013
792013
Composite repetition-aware data structures
D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot
Annual Symposium on Combinatorial Pattern Matching, 26-39, 2015
732015
Variable-order de Bruijn graphs
C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane
2015 data compression conference, 383-392, 2015
682015
Approximate pattern matching in LZ77-compressed texts
T Gagie, P Gawrychowski, SJ Puglisi
Journal of Discrete Algorithms 32, 64-68, 2015
60*2015
Large alphabets and incompressibility
T Gagie
Information Processing Letters 99 (6), 246-251, 2006
532006
Queries on LZ-bounded encodings
D Belazzougui, T Gagie, P Gawrychowski, J Kärkkäinen, A Ordónez, ...
2015 Data Compression Conference, 83-92, 2015
512015
Efficient construction of a complete index for pan-genomics read alignment
A Kuhnle, T Mun, C Boucher, T Gagie, B Langmead, G Manzini
Journal of Computational Biology 27 (4), 500-513, 2020
472020
Move-to-front, distance coding, and inversion frequencies revisited
T Gagie, G Manzini
Theoretical computer science 411 (31-33), 2925-2944, 2010
45*2010
Prefix-free parsing for building big BWTs
C Boucher, T Gagie, A Kuhnle, B Langmead, G Manzini, T Mun
Algorithms for Molecular Biology 14 (1), 1-15, 2019
432019
A subquadratic algorithm for minimum palindromic factorization
G Fici, T Gagie, J Kärkkäinen, D Kempa
Journal of Discrete Algorithms 28, 41-48, 2014
432014
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Artiklar 1–20