Travis Gagie

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Gonzalo NavarroUniversity of ChileVerifierad e-postadress på dcc.uchile.cl
Simon J. PuglisiProfessor, Department of Computer Science, University of HelsinkiVerifierad e-postadress på cs.helsinki.fi
Giovanni ManziniUniversity of PisaVerifierad e-postadress på unipi.it
Christina BoucherUniversity of FloridaVerifierad e-postadress på ufl.edu
Nicola PrezzaCa' Foscari University of VeniceVerifierad e-postadress på unive.it
Ben LangmeadAssociate Professor of Computer Science, Johns Hopkins UniversityVerifierad e-postadress på cs.jhu.edu
Juha KärkkäinenDepartment of Computer scienceVerifierad e-postadress på cs.helsinki.fi
Yakov NekrichAssociate Professor, Michigan Technological UniveristyVerifierad e-postadress på uwaterloo.ca
Paweł GawrychowskiUniversity of WrocławVerifierad e-postadress på cs.uni.wroc.pl
Jouni SirénUC Santa Cruz Genomics InstituteVerifierad e-postadress på ucsc.edu
djamal belazzouguiCERISTVerifierad e-postadress på cerist.dz
Veli MäkinenProfessor of Computer Science, University of HelsinkiVerifierad e-postadress på helsinki.fi
Meng HeProfessor, Faculty of Computer Science, Dalhousie UniversityVerifierad e-postadress på cs.dal.ca
Marco OlivaComputer and Information Science and Engineering, University of FloridaVerifierad e-postadress på ufl.edu
Dominik KöpplFaculty for Engineering, University of YamanashiVerifierad e-postadress på tu-dortmund.de
Alan KuhnleTexas A&M UniversityVerifierad e-postadress på tamu.edu
Paolo FerraginaProfessor of Algorithms, Dept. Computer Science, University of PisaVerifierad e-postadress på unipi.it
Hideo BannaiProfessor, M&D Data Science Center, Institute of Science Tokyo, JapanVerifierad e-postadress på tmd.ac.jp
Alex BoweIndependent ResearcherVerifierad e-postadress på alexbowe.com
Omar Y. AhmedJohns Hopkins UniversityVerifierad e-postadress på jhu.edu

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Travis Gagie

Associate Professor at Dalhousie University

Verifierad e-postadress på dal.ca

data structures data compression


Titel Sortera efter citat Sortera efter år Sortera efter titel	Citeras av Citeras av	År
Fully functional suffix trees and optimal text searching in BWT-runs bounded space T Gagie, G Navarro, N Prezza Journal of the ACM (JACM) 67 (1), 1-54, 2020	211	2020
New algorithms on wavelet trees and applications to information retrieval T Gagie, G Navarro, SJ Puglisi Theoretical Computer Science 426, 25-41, 2012	142	2012
Optimal-time text indexing in BWT-runs bounded space T Gagie, G Navarro, N Prezza Proceedings of the Twenty-Ninth Annual ACM-SIAM Symposium on Discrete …, 2018	139	2018
Succinct colored de Bruijn graphs MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ... Bioinformatics 33 (20), 3181-3187, 2017	135	2017
Wheeler graphs: A framework for BWT-based data structures T Gagie, G Manzini, J Sirén Theoretical computer science 698, 67-78, 2017	120	2017
A faster grammar-based self-index T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi International Conference on Language and Automata Theory and Applications …, 2012	118	2012
Lightweight data indexing and compression in external memory P Ferragina, T Gagie, G Manzini Algorithmica 63 (3), 707-730, 2012	113	2012
Range quantile queries: Another virtue of wavelet trees T Gagie, SJ Puglisi, A Turpin International Symposium on String Processing and Information Retrieval, 1-6, 2009	106	2009
Prefix-free parsing for building big BWTs C Boucher, T Gagie, A Kuhnle, B Langmead, G Manzini, T Mun Algorithms for Molecular Biology 14, 1-15, 2019	94	2019
LZ77-based self-indexing with faster pattern matching T Gagie, P Gawrychowski, J Kärkkäinen, Y Nekrich, SJ Puglisi Latin American Symposium on Theoretical Informatics, 731-742, 2014	93	2014
Colored range queries and document retrieval T Gagie, J Kärkkäinen, G Navarro, SJ Puglisi Theoretical Computer Science 483, 36-50, 2013	91	2013
Variable-order de Bruijn graphs C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane 2015 data compression conference, 383-392, 2015	86	2015
Composite repetition-aware data structures D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot Combinatorial Pattern Matching: 26th Annual Symposium, CPM 2015, Ischia …, 2015	80	2015
Alphabet partitioning for compressed rank/select and applications J Barbay, T Gagie, G Navarro, Y Nekrich International Symposium on Algorithms and Computation, 315-326, 2010	77	2010
MONI: a pangenomic index for finding maximal exact matches M Rossi, M Oliva, B Langmead, T Gagie, C Boucher Journal of Computational Biology 29 (2), 169-187, 2022	75	2022
Refining the r-index H Bannai, T Gagie, I Tomohiro Theoretical Computer Science 812, 96-108, 2020	68	2020
Efficient fully-compressed sequence representations J Barbay, F Claude, T Gagie, G Navarro, Y Nekrich Algorithmica 69 (1), 232-268, 2014	67	2014
Large alphabets and incompressibility T Gagie Information Processing Letters 99 (6), 246-251, 2006	60	2006
Efficient construction of a complete index for pan-genomics read alignment A Kuhnle, T Mun, C Boucher, T Gagie, B Langmead, G Manzini Journal of Computational Biology 27 (4), 500-513, 2020	59	2020
Queries on LZ-bounded encodings D Belazzougui, T Gagie, P Gawrychowski, J Kärkkäinen, A Ordónez, ... 2015 Data Compression Conference, 83-92, 2015	56	2015

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