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João M. Martins
João M. Martins
Post-Doctoral Research Scientist, Department of Computer Science, University of Copenhagen
Verifierad e-postadress på di.ku.dk - Startsida
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The PCNA interaction motifs revisited: thinking outside the PIP-box
A Prestel, N Wichmann, JM Martins, R Marabini, N Kassem, SS Broendum, ...
Cellular and Molecular Life Sciences 76, 4923-4943, 2019
842019
Biomolecular conformational changes and ligand binding: from kinetics to thermodynamics
Y Wang, JM Martins, K Lindorff-Larsen
Chemical Science 8 (9), 6466-6473, 2017
522017
Understanding the importance of the aromatic amino-acid residues as hot-spots
IS Moreira, JM Martins, RM Ramos, PA Fernandes, MJ Ramos
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1834 (1), 404-414, 2013
502013
DEER-PREdict: software for efficient calculation of Spin-Labeling EPR and NMR data from conformational ensembles
G Tesei, JM Martins, MBA Kunze, Y Wang, R Crehuet, K Lindorff-Larsen
PLOS Computational Biology 17 (1), e1008551, 2021
442021
Molecular dynamics-guided discovery of an ago-allosteric modulator for GPR40/FFAR1
M Lückmann, M Trauelsen, MA Bentsen, TAD Nissen, J Martins, Z Fallah, ...
Proceedings of the National Academy of Sciences 116 (14), 7123-7128, 2019
372019
Solvent‐accessible surface area: How well can be applied to hot‐spot detection?
JM Martins, RM Ramos, AC Pimenta, IS Moreira
Proteins: Structure, Function, and Bioinformatics 82 (3), 479-490, 2014
282014
A New Scoring Function for Protein-Protein Docking that Identifies Native Structures with Unprecedented Accuracy
IS Moreira, JM Martins, JTS Coimbra, MJ Ramos, PA Fernandes
Physical Chemistry Chemical Physics, 2014
222014
A robust proton flux (pHlux) assay for studying the function and inhibition of the influenza a M2 proton channel
P Santner, JMS Martins, JS Laursen, L Behrendt, L Riber, CA Olsen, ...
Biochemistry 57 (41), 5949-5956, 2018
192018
Are hot-spots occluded from water?
IS Moreira, RM Ramos, JM Martins, PA Fernandes, MJ Ramos
Journal of Biomolecular Structure and Dynamics 32 (2), 186-197, 2014
142014
Random mutagenesis analysis of the influenza A M2 proton channel reveals novel resistance mutants
P Santner, JMS Martins, C Kampmeyer, R Hartmann-Petersen, ...
Biochemistry 57 (41), 5957-5968, 2018
132018
Dynamic structure of NGF and proNGF complexed with p75NTR: pro-peptide effect
AC Pimenta, DFAR Dourado, JM Martins, A Melo, ...
Journal of chemical information and modeling 54 (7), 2051-2067, 2014
122014
A context-dependent and disordered ubiquitin-binding motif
JE Dreier, A Prestel, JM Martins, SS Brøndum, O Nielsen, AE Garbers, ...
Cellular and Molecular Life Sciences 79 (9), 484, 2022
112022
Ligand-Induced Structural Changes in TEM-1 Probed by Molecular Dynamics and Relative Binding Free Energy Calculations
AC Pimenta, JM Martins, R Fernandes, IS Moreira
Journal of chemical information and modeling 53 (10), 2648-2658, 2013
82013
Structural determinats of a typical leucine-rich repeat protein
J Martins, R Ramos, I Moreira
Commun. Comput. Phys, 2012
62012
FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries
D Montepietra, G Tesei, JM Martins, MBA Kunze, RB Best, ...
Communications Biology 7 (1), 298, 2024
52024
Context Matters in Disorder Based Protein Communication
BB Kragelund, A Prestel, N Wickmann, J Martins, W Boomsma, L Staby, ...
Biophysical Journal 118 (3), 491a, 2020
2020
Computational Studies of Drug Resistance: Investigating Binding Affinities and Structural Ensembles of Proteins
JM Martins
University of Copenhagen, Faculty of Science [Department of Biology], 2017
2017
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Artiklar 1–17