Eugene Kolker
Eugene Kolker
Professor, Tandon School of Engineering, New York Univ. & Biomed. Informatics, Univ. of Washington
Verified email at
Cited by
Cited by
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller, AI Nesvizhskii, E Kolker, R Aebersold
Analytical chemistry 74 (20), 5383-5392, 2002
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii, A Keller, E Kolker, R Aebersold
Analytical chemistry 75 (17), 4646-4658, 2003
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541-547, 2008
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature biotechnology 26 (8), 889-896, 2008
Genome project standards in a new era of sequencing
PSG Chain, DV Grafham, RS Fulton, MG Fitzgerald, J Hostetler, D Muzny, ...
Science 326 (5950), 236-237, 2009
Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation
DR Goodlett, A Keller, JD Watts, R Newitt, EC Yi, S Purvine, JK Eng, ...
Rapid Communications in Mass Spectrometry 15 (14), 1214-1221, 2001
Experimental protein mixture for validating tandem mass spectral analysis
A Keller, S Purvine, AI Nesvizhskii, S Stolyar, DR Goodlett, E Kolker
Omics: a journal of integrative biology 6 (2), 207-212, 2002
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project
JA Gilbert, F Meyer, D Antonopoulos, P Balaji, CT Brown, CT Brown, ...
Standards in genomic sciences 3 (3), 243-248, 2010
Transcriptome analysis of Escherichia coli using high‐density oligonucleotide probe arrays
B Tjaden, RM Saxena, S Stolyar, DR Haynor, E Kolker, C Rosenow
Nucleic acids research 30 (17), 3732-3738, 2002
'Omics data sharing
D Field, SA Sansone, A Collis, T Booth, P Dukes, SK Gregurick, ...
Science 326 (5950), 234-236, 2009
In-silico human genomics with GeneCards
G Stelzer, I Dalah, TI Stein, Y Satanower, N Rosen, N Nativ, D Oz-Levi, ...
Human genomics 5 (6), 1-9, 2011
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations
E Kolker, AF Picone, MY Galperin, MF Romine, R Higdon, KS Makarova, ...
Proceedings of the National Academy of Sciences 102 (6), 2099-2104, 2005
MOPED: model organism protein expression database
E Kolker, R Higdon, W Haynes, D Welch, W Broomall, D Lancet, ...
Nucleic acids research 40 (D1), D1093-D1099, 2012
Interplay of heritage and habitat in the distribution of bacterial signal transduction systems
MY Galperin, R Higdon, E Kolker
Molecular BioSystems 6 (4), 721-728, 2010
Randomized sequence databases for tandem mass spectrometry peptide and protein identification
R Higdon, JM Hogan, GV Belle, E Kolker
Omics: a journal of integrative biology 9 (4), 364-379, 2005
Identification and functional analysis of ‘hypothetical’ genes expressed in Haemophilus influenzae
E Kolker, KS Makarova, S Shabalina, AF Picone, S Purvine, T Holzman, ...
Nucleic acids research 32 (8), 2353-2361, 2004
Differential expression analysis for pathways
WA Haynes, R Higdon, L Stanberry, D Collins, E Kolker
PLoS Comput Biol 9 (3), e1002967, 2013
Initial proteome analysis of model microorganism Haemophilus influenzae strain Rd KW20
E Kolker, S Purvine, MY Galperin, S Stolyar, DR Goodlett, AI Nesvizhskii, ...
Journal of bacteriology 185 (15), 4593-4602, 2003
Underlying order in protein sequence organization
AL Berman, E Kolker, EN Trifonov
Proceedings of the National Academy of Sciences 91 (9), 4044-4047, 1994
Genic insights from integrated human proteomics in GeneCards
S Fishilevich, S Zimmerman, A Kohn, T Iny Stein, T Olender, E Kolker, ...
Database 2016, 2016
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