| Automated 3D structure composition for large RNAs M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ... Nucleic acids research 40 (14), e112-e112, 2012 | 722 | 2012 |
| New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016 | 197 | 2016 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 192 | 2017 |
| RNA-Puzzles Round II: Assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... RNA 21 (6), 1-19, 2015 | 187 | 2015 |
| RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures M Popenda, M Szachniuk, M Blazewicz, S Wasik, EK Burke, J Blazewicz, ... BMC bioinformatics 11, 1-12, 2010 | 176 | 2010 |
| Automated RNA 3D structure prediction with RNAComposer M Biesiada, KJ Purzycka, M Szachniuk, J Blazewicz, RW Adamiak RNA Structure Determination: Methods and Protocols, 199-215, 2016 | 153 | 2016 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 121 | 2020 |
| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 111 | 2018 |
| RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures M Popenda, M Błażewicz, M Szachniuk, RW Adamiak Nucleic Acids Research 36 (suppl_1), D386-D391, 2008 | 95 | 2008 |
| RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014 | 83 | 2014 |
| RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 69 | 2020 |
| Automated 3D RNA structure prediction using the RNAComposer method for riboswitches RWA K.J. Purzycka, M. Popenda, M. Szachniuk, M. Antczak, P. Lukasiak, J ... Methods in Enzymology 553, 3-34, 2014 | 57* | 2014 |
| Sorting signal targeting mRNA into hepatic extracellular vesicles N Szostak, F Royo, A Rybarczyk, M Szachniuk, J Blazewicz, A del Sol, ... RNA biology 11 (7), 836-844, 2014 | 46 | 2014 |
| When will RNA get its AlphaFold moment? B Schneider, BA Sweeney, A Bateman, J Cerny, T Zok, M Szachniuk Nucleic Acids Research 51 (18), 9522-9532, 2023 | 44 | 2023 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 43 | 2018 |
| MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22, 457-473, 2014 | 40 | 2014 |
| New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16, 1-12, 2015 | 38 | 2015 |
| RNAsolo: a repository of cleaned PDB-derived RNA 3D structures B Adamczyk, M Antczak, M Szachniuk Bioinformatics 38 (14), 3668-3670, 2022 | 32 | 2022 |
| New prediction categories in CASP15 A Kryshtafovych, M Antczak, M Szachniuk, T Zok, RC Kretsch, R Rangan, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1550-1557, 2023 | 31 | 2023 |
| The orderly colored longest path problem-a survey of applications and new algorithms M Szachniuk, M Cristina De Cola, G Felici, J Blazewicz RAIRO-Operations Research-Recherche Opérationnelle 48 (1), 25-51, 2014 | 30 | 2014 |
Mariusz PopendaDr chemii, PANVerified email at ibch.poznan.pl
