A transcriptomic analysis of superhybrid rice LYP9 and its parents G Wei, Y Tao, G Liu, C Chen, R Luo, H Xia, Q Gan, H Zeng, Z Lu, Y Han, ... Proceedings of the National Academy of Sciences 106 (19), 7695-7701, 2009 | 223 | 2009 |
Bioinformatics methods for mass spectrometry-based proteomics data analysis C Chen, J Hou, JJ Tanner, J Cheng International journal of molecular sciences 21 (8), 2873, 2020 | 202 | 2020 |
Multiomics profiling establishes the polypharmacology of FDA-approved CDK4/6 inhibitors and the potential for differential clinical activity M Hafner, CE Mills, K Subramanian, C Chen, M Chung, SA Boswell, ... Cell chemical biology 26 (8), 1067-1080. e8, 2019 | 177 | 2019 |
Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa J Hou, X Shi, C Chen, MS Islam, AF Johnson, T Kanno, B Huettel, MR Yen, ... Proceedings of the National Academy of Sciences 115 (48), E11321-E11330, 2018 | 58 | 2018 |
DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng BMC bioinformatics 22, 1-18, 2021 | 57 | 2021 |
Identification of AT lineage antigen in the catfish BJ Passer, CIH Chen, NW Miller, MD Cooper Developmental & Comparative Immunology 20 (6), 441-450, 1996 | 49 | 1996 |
Development of cytoplasmic CD3+/T cell receptor‐negative cells in the peripheral lymphoid tissues of chickens R Pat Bucy, CIH Chen, MD Cooper European journal of immunology 20 (6), 1345-1350, 1990 | 48 | 1990 |
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution N Blavet, H Yang, H Su, P Solanský, RN Douglas, M Karafiátová, ... Proceedings of the National Academy of Sciences 118 (23), e2104254118, 2021 | 36 | 2021 |
Combination of deep neural network with attention mechanism enhances the explainability of protein contact prediction C Chen, T Wu, Z Guo, J Cheng Proteins: Structure, Function, and Bioinformatics 89 (6), 697-707, 2021 | 34 | 2021 |
Trb3 controls mesenchymal stem cell lineage fate and enhances bone regeneration by scaffold-mediated local gene delivery J Fan, CS Lee, S Kim, X Zhang, J Pi-Anfruns, M Guo, C Chen, ... Biomaterials 264, 120445, 2021 | 34 | 2021 |
Geometric transformers for protein interface contact prediction A Morehead, C Chen, J Cheng arXiv preprint arXiv:2110.02423, 2021 | 30 | 2021 |
Berberine reverses abnormal expression of L-type pyruvate kinase by DNA demethylation and histone acetylation in the livers of the non-alcoholic fatty disease rat Y Zhang, X Chang, X Song, C Chen, H Chen, Z Lu, X Gao, D Lu International journal of clinical and experimental medicine 8 (5), 7535, 2015 | 29 | 2015 |
Genomic imbalance determines positive and negative modulation of gene expression in diploid maize X Shi, H Yang, C Chen, J Hou, KM Hanson, PS Albert, T Ji, J Cheng, ... The Plant Cell 33 (4), 917-939, 2021 | 24 | 2021 |
Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler The Plant Cell 33 (4), 901-916, 2021 | 22 | 2021 |
Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii N Zhang, EM Mattoon, W McHargue, B Venn, D Zimmer, K Pecani, ... Communications biology 5 (1), 460, 2022 | 21 | 2022 |
3D-equivariant graph neural networks for protein model quality assessment C Chen, X Chen, A Morehead, T Wu, J Cheng Bioinformatics 39 (1), btad030, 2023 | 20 | 2023 |
Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15 J Liu, Z Guo, T Wu, RS Roy, F Quadir, C Chen, J Cheng Communications Biology 6 (1), 1140, 2023 | 19 | 2023 |
Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance AF Johnson, J Hou, H Yang, X Shi, C Chen, MS Islam, T Ji, J Cheng, ... Journal of genetics and genomics 47 (2), 93-103, 2020 | 18 | 2020 |
Dips-plus: The enhanced database of interacting protein structures for interface prediction A Morehead, C Chen, A Sedova, J Cheng Scientific Data 10 (1), 509, 2023 | 15 | 2023 |
Quantitative proteomics reveals docosahexaenoic acid-mediated neuroprotective effects in lipopolysaccharide-stimulated microglial cells B Yang, R Li, PN Liu, X Geng, BP Mooney, C Chen, J Cheng, KL Fritsche, ... Journal of proteome research 19 (6), 2236-2246, 2020 | 14 | 2020 |