Julien Allali
Julien Allali
maître de conférences informatique, LaBRI, IPB
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A new distance for high level RNA secondary structure comparison
J Allali, MF Sagot
IEEE/ACM transactions on computational biology and bioinformatics 2 (1), 3-14, 2005
The at-most -deep factor tree
J Allali, MF Sagot
Adaptation of string matching algorithms for identification of near-duplicate music documents
M Robine, P Hanna, P Ferraro, J Allali
Workshop on plagiarism analysis, authorship identification, and near …, 2007
BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms
J Allali, C Saule, C Chauve, Y d’Aubenton-Carafa, A Denise, C Drevet, ...
Advances in bioinformatics 2012 (1), 893048, 2012
Improvements of alignment algorithms for polyphonic music retrieval
P Hanna, M Robine, P Ferraro, J Allali
Computer Music Modeling and Retrieval 2008, 244-251, 2008
Local transpositions in alignment of polyphonic musical sequences
J Allali, P Ferraro, P Hanna, C Iliopoulos
International Symposium on String Processing and Information Retrieval, 26-38, 2007
Rhoban football club: Robocup humanoid kid-size 2016 champion team paper
J Allali, L Deguillaume, R Fabre, L Gondry, L Hofer, O Ly, S N’Guyen, ...
RoboCup 2016: Robot World Cup XX 20, 491-502, 2017
Novel tree edit operations for RNA secondary structure comparison
J Allali, MF Sagot
Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen …, 2004
A multiple layer model to compare RNA secondary structures
J Allali, MF Sagot
Software: Practice and Experience 38 (8), 775-792, 2008
A multiple graph layers model with application to RNA secondary structures comparison
J Allali, MF Sagot
String Processing and Information Retrieval: 12th International Conference …, 2005
Toward a general framework for polyphonic comparison
J Allali, P Ferraro, P Hanna, C Iliopoulos, M Robine
Fundamenta Informaticae 97 (3), 331-346, 2009
Polyphonic alignment algorithms for symbolic music retrieval
J Allali, P Ferraro, P Hanna, M Robine
International Symposium on Computer Music Modeling and Retrieval, 466-482, 2009
Indexing gapped-factors using a tree
P Peterlongo, J Allali, MF Sagot
International Journal of Foundations of Computer Science 19 (01), 71-87, 2008
A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets
A Ayllón-Benítez, F Mougin, J Allali, R Thiébaut, P Thébault
PLoS One 13 (11), e0208037, 2018
The gapped-factor tree
P Peterlongo, J Allali, MF Sagot
Prague Stringology Conference 2006, 182--196, 2006
Rhoban football club–team description paper
J Allali, L Gondry, L Hofer, P Laborde-Zubieta, O Ly, S N’Guyen, ...
Technical report, 2019
Efficient chaining of seeds in ordered trees
J Allali, C Chauve, P Ferraro, AL Gaillard
International Workshop on Combinatorial Algorithms, 260-273, 2010
Comparaison de structures secondaires d'ARN
J Allali
Université de Marne la Vallée, 2004
Chaining sequence/structure seeds for computing RNA similarity
L Bourgeade, C Chauve, J Allali
Journal of Computational Biology 22 (3), 205-217, 2015
Efficient chaining of seeds in ordered trees
J Allali, C Chauve, P Ferraro, AL Gaillard
Journal of Discrete Algorithms 14, 107-118, 2012
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