Vitor C. Sousa

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Laurent ExcoffierInstitute of Ecology and Evolution, University of BerneVerified email at iee.unibe.ch
Lounès ChikhiCRBE, CNRS, Toulouse, France - Instituto Gulbenkian de Ciência, PortugalVerified email at univ-tlse3.fr
Matthieu FollInternational Agency for Research on Cancer (IARC/WHO)Verified email at iarc.who.int
David Alexander MarquesCurator Vertebrates, Natural History Museum Basel, SwitzerlandVerified email at bs.ch
Mark BeaumontProfessor of Statistics, University of BristolVerified email at bristol.ac.uk
Emilia Huerta-SanchezBrown universityVerified email at brown.edu
Ole SeehausenProfessor of Ecology and Evolution, University of BernVerified email at eawag.ch
Catherine LinnenAssociate Professor, University of Kentucky, Department of BiologyVerified email at uky.edu
Jeffrey D. JensenProfessor, Arizona State University (ASU)Verified email at asu.edu
Stefan LaurentMax Planck Institute for Plant Breeding ResearchVerified email at mpipz.mpg.de
Susanne PfeiferArizona State UniversityVerified email at asu.edu
Benoit GoossensProfessor in Biology, Cardiff UniversityVerified email at cardiff.ac.uk
María C. Ávila-ArcosUNAM - Assistant ProfessorVerified email at liigh.unam.mx
Robin W BairdCascadia Research CollectiveVerified email at cascadiaresearch.org
Michael David MartinDept of Natural History, University Museum, Norwegian University of Science and Technology (NTNU)Verified email at ntnu.no
Thorfinn Sand KorneliussenAssociate Professor, University of CopenhagenVerified email at sund.ku.dk
John DurbanMarine Mammal Institute, Oregon State UniversityVerified email at oregonstate.edu
Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk
M Thomas P GilbertUniversity of CopenhagenVerified email at sund.ku.dk
Nagarjun VijayIndian Institute of Science Education and Research, BhopalVerified email at iiserb.ac.in

Vitor C. Sousa

cE3c – Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade

Verified email at fc.ul.pt

population genetics statistical genetics human genetics genomics molecular ecology and speciation


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Robust Demographic Inference from Genomic and SNP Data L Excoffier, I Dupanloup, E Huerta-Sánchez, VC Sousa, M Foll PLOS Genetics 9 (10), e1003905, 2013	1342	2013
A genomic history of Aboriginal Australia AS Malaspinas, MC Westaway, C Muller, VC Sousa, O Lao, I Alves, ... Nature 538 (7624), 207-214, 2016	582	2016
The population history of northeastern Siberia since the Pleistocene M Sikora, VV Pitulko, VC Sousa, ME Allentoft, L Vinner, S Rasmussen, ... Nature 570 (7760), 182-188, 2019	345	2019
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers M Sikora, A Seguin-Orlando, VC Sousa, A Albrechtsen, T Korneliussen, ... Science 358 (6363), 659-662, 2017	327	2017
The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes L Chikhi, VC Sousa, P Luisi, B Goossens, MA Beaumont Genetics 186 (3), 983-995, 2010	322	2010
Understanding the origin of species with genome-scale data: modelling gene flow V Sousa, J Hey Nature Reviews Genetics 14 (6), 404-414, 2013	321	2013
Chimpanzee genomic diversity reveals ancient admixture with bonobos M de Manuel, M Kuhlwilm, P Frandsen, VC Sousa, T Desai, ... Science 354 (6311), 477-481, 2016	304	2016
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes AD Foote, N Vijay, MC Ávila-Arcos, RW Baird, JW Durban, M Fumagalli, ... Nature communications 7 (1), 11693, 2016	275	2016
fastsimcoal2: demographic inference under complex evolutionary scenarios L Excoffier, N Marchi, DA Marques, R Matthey-Doret, A Gouy, VC Sousa Bioinformatics 37 (24), 4882-4885, 2021	171	2021
From genetic diversity and structure to conservation: genetic signature of recent population declines in three mouse lemur species (Microcebus spp.) GL Olivieri, V Sousa, L Chikhi, U Radespiel Biological Conservation 141 (5), 1257-1271, 2008	124	2008
Demographic modelling with whole‐genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization JI Meier, VC Sousa, DA Marques, OM Selz, CE Wagner, L Excoffier, ... Molecular ecology 26 (1), 123-141, 2017	123	2017
Phylogeny Estimation by Integration over Isolation with Migration Models J Hey, Y Chung, A Sethuraman, J Lachance, S Tishkoff, VC Sousa, ... Molecular biology and evolution 35 (11), 2805-2818, 2018	115	2018
Influence of forest fragmentation on an endangered large-bodied lemur in northwestern Madagascar M Craul, L Chikhi, V Sousa, GL Olivieri, A Rabesandratana, ... Biological conservation 142 (12), 2862-2871, 2009	103	2009
The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow SP Pfeifer, S Laurent, VC Sousa, CR Linnen, M Foll, L Excoffier, ... Molecular biology and evolution 35 (4), 792-806, 2018	88	2018
Approximate Bayesian computation without summary statistics: the case of admixture VC Sousa, M Fritz, MA Beaumont, L Chikhi Genetics 181 (4), 1507-1519, 2009	88	2009
Ancient admixture from an extinct ape lineage into bonobos M Kuhlwilm, S Han, VC Sousa, L Excoffier, T Marques-Bonet Nature ecology & evolution 3 (6), 957-965, 2019	75	2019
Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models VC Sousa, M Carneiro, N Ferrand, J Hey Genetics 194 (1), 211-233, 2013	68	2013
The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards S Laurent, SP Pfeifer, ML Settles, SS Hunter, KM Hardwick, L Ormond, ... Molecular ecology 25 (1), 306-323, 2016	64	2016
Population divergence with or without admixture: selecting models using an ABC approach VC Sousa, MA Beaumont, P Fernandes, MM Coelho, L Chikhi Heredity 108 (5), 521-530, 2012	63	2012
Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback DA Marques, K Lucek, VC Sousa, L Excoffier, O Seehausen Nature communications 10 (1), 4240, 2019	59	2019

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