Richard Neher
Richard Neher
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Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
12042018
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.
M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ...
Swiss medical weekly 150 (11-12), w20225-, 2020
3872020
TreeTime: maximum likelihood phylodynamic analysis
P Sagulenko, V Puller, R Neher
bioRxiv, 153494, 2017
3322017
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss Medical Weekly 150 (1112), 2020
2492020
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell 181 (5), 990-996. e5, 2020
2232020
2019-novel Coronavirus (2019-nCoV): estimating the case fatality rate–a word of caution
M Battegay, R Kuehl, S Tschudin-Sutter, HH Hirsch, AF Widmer, ...
Swiss Medical Weekly 150 (0506), 2020
2022020
Recombination rate and selection strength in HIV intra-patient evolution
RA Neher, T Leitner
PLoS computational biology 6 (1), e1000660, 2010
1892010
Population genomics of intrapatient HIV-1 evolution
F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert, RA Neher
eLife 4, e11282, 2016
1822016
Genealogies of rapidly adapting populations
RA Neher, O Hallatschek
Proceedings of the National Academy of Sciences 110 (2), 437-442, 2013
1742013
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
1682020
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature, 1-9, 2021
152*2021
panX: pan-genome analysis and exploration
W Ding, F Baumdicker, RA Neher
Nucleic Acids Research 46 (1), e5-e5, 2017
1432017
Optimizing imaging parameters for the separation of multiple labels in a fluorescence image
R Neher, E Neher
Journal of microscopy 213 (1), 46-62, 2004
1422004
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
RA Neher, T Bedford, RS Daniels, CA Russell, BI Shraiman
Proceedings of the National Academy of Sciences 113 (12), E1701-E1709, 2016
1362016
Predicting evolution from the shape of genealogical trees
RA Neher, CA Russell, BI Shraiman
eLife 3, e03568, 2014
1342014
Genetic draft, selective interference, and population genetics of rapid adaptation
RA Neher
Annual review of Ecology, evolution, and Systematics 44, 195-215, 2013
1282013
Blind source separation techniques for the decomposition of multiply labeled fluorescence images
RA Neher, M Mitkovski, F Kirchhoff, E Neher, FJ Theis, A Zeug
Biophysical journal 96 (9), 3791-3800, 2009
1222009
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
1112020
Competition between recombination and epistasis can cause a transition from allele to genotype selection
RA Neher, BI Shraiman
Proceedings of the National Academy of Sciences 106 (16), 6866-6871, 2009
1112009
nextflu: real-time tracking of seasonal influenza virus evolution in humans
RA Neher, T Bedford
Bioinformatics 31 (21), 3546-3548, 2015
1092015
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Artiklar 1–20