David Kainer
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Selecting optimal partitioning schemes for phylogenomic datasets
R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis
BMC evolutionary biology 14 (1), 1-14, 2014
Plant-Derived Terpenes: A Feedstock for Specialty Biofuels
R Mewalal, DK Rai, D Kainer, F Chen, C Külheim, GF Peter, GA Tuskan
Trends in Biotechnology 35 (3), 227-240, 2017
The effects of partitioning on phylogenetic inference
D Kainer, R Lanfear
Molecular biology and evolution 32 (6), 1611-1627, 2015
MinIONQC: fast and simple quality control for MinION sequencing data
R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger
Bioinformatics 35 (3), 523-525, 2019
Accelerating climate resilient plant breeding by applying next-generation artificial intelligence
AL Harfouche, DA Jacobson, D Kainer, JC Romero, AH Harfouche, ...
Trends in biotechnology 37 (11), 1217-1235, 2019
Multi‐trait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits
HB Chhetri, DM Sanz, D Kainer, AK Biswal, LM Evans, JG Chen, ...
New Phytologist, 2019
Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
M Schalamun, R Nagar, D Kainer, E Beavan, D Eccles, JP Rathjen, ...
Molecular ecology resources 19 (1), 77-89, 2019
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction
W Joubert, D Weighill, D Kainer, S Climer, A Justice, K Fagnan, ...
SC18: International Conference for High Performance Computing, Networking …, 2018
Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models
MR Garvin, ET Prates, M Pavicic, P Jones, BK Amos, A Geiger, MB Shah, ...
Genome Biology 21 (1), 1-26, 2020
Assembly of chloroplast genomes with long-and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
W Wang, M Schalamun, A Morales-Suarez, D Kainer, B Schwessinger, ...
BMC genomics 19 (1), 1-15, 2018
Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea
D Kainer, EA Stone, A Padovan, WJ Foley, C Külheim
G3: Genes, Genomes, Genetics 8 (8), 2573-2583, 2018
The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
W Wang, A Das, D Kainer, M Schalamun, A Morales-Suarez, ...
GigaScience 9 (1), giz160, 2020
High Throughput Screening Technologies in Biomass Characterization
SR Decker, AE Harman-Ware, RM Happs, EJ Wolfrum, GA Tuskan, ...
Frontiers in Energy Research 6, 120, 2018
Genomic approaches to selection in outcrossing perennials: focus on essential oil crops
D Kainer, R Lanfear, WJ Foley, C Külheim
Theoretical and Applied Genetics 128 (12), 2351-2365, 2015
A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant
AJ Orr, A Padovan, D Kainer, C Külheim, L Bromham, C Bustos-Segura, ...
Proceedings of the Royal Society B 287 (1922), 20192364, 2020
Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals?
J Streich, J Romero, JGFM Gazolla, D Kainer, A Cliff, ET Prates, JB Brown, ...
Current Opinion in Biotechnology 61, 217-225, 2020
A High-Performance Computing Implementation of Iterative Random Forest for the Creation of Predictive Expression Networks
A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson
Genes 10 (12), 996, 2019
High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus
D Kainer, A Padovan, J Degenhardt, S Krause, P Mondal, WJ Foley, ...
New Phytologist, 2019
Assessment of a non-destructive method to predict oil yield in Eucalyptus polybractea (blue mallee)
D Kainer, D Bush, WJ Foley, C Külheim
Industrial Crops and Products 102, 32-44, 2017
Finding new cell wall regulatory genes in Populus trichocarpa using multiple lines of evidence
A Furches, D Kainer, D Weighill, A Large, P Jones, AM Walker, J Romero, ...
Frontiers in plant science 10, 1249, 2019
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