Daniele Raimondi
Title
Cited by
Cited by
Year
Improved contact predictions using the recognition of protein like contact patterns
MJ Skwark, D Raimondi, M Michel, A Elofsson
PLoS computational biology 10 (11), 2014
1312014
Early folding events, local interactions, and conservation of protein backbone rigidity
R Pancsa, D Raimondi, E Cilia, WF Vranken
Biophysical journal 110 (3), 572-583, 2016
182016
Understanding mutational effects in digenic diseases
A Gazzo, D Raimondi, D Daneels, Y Moreau, G Smits, S Van Dooren, ...
Nucleic acids research 45 (15), e140-e140, 2017
162017
Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects
D Raimondi, AM Gazzo, M Rooman, T Lenaerts, WF Vranken
Bioinformatics 32 (12), 1797-1804, 2016
152016
Exploring the sequence-based prediction of folding initiation sites in proteins
D Raimondi, G Orlando, R Pancsa, T Khan, WF Vranken
Scientific reports 7 (1), 1-11, 2017
132017
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins
D Raimondi, I Tanyalcin, J Ferté, A Gazzo, G Orlando, T Lenaerts, ...
Nucleic Acids Research, 2017
132017
Observation selection bias in contact prediction and its implications for structural bioinformatics
G Orlando, D Raimondi, WF Vranken
Scientific reports 6 (1), 1-8, 2016
112016
Clustering-based model of cysteine co-evolution improves disulfide bond connectivity prediction and reduces homologous sequence requirements
D Raimondi, G Orlando, WF Vranken
Bioinformatics 31 (8), 1219-1225, 2015
102015
An evolutionary view on disulfide bond connectivities prediction using phylogenetic trees and a simple cysteine mutation model
D Raimondi, G Orlando, WF Vranken
PloS one 10 (7), 2015
62015
Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates
G Orlando, D Raimondi, F Tabaro, F Codicč, Y Moreau, WF Vranken
Bioinformatics 35 (22), 4617-4623, 2019
42019
Investigating the Molecular Mechanisms Behind Uncharacterized Cysteine Losses from Prediction of Their Oxidation State
D Raimondi, G Orlando, J Messens, WF Vranken
Human Mutation 38 (1), 86-94, 2016
42016
SVM-dependent pairwise HMM: an application to protein pairwise alignments
G Orlando, D Raimondi, T Khan, T Lenaerts, WF Vranken
Bioinformatics 33 (24), 3902-3908, 2017
32017
Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping
D Raimondi, G Orlando, Y Moreau, WF Vranken
Bioinformatics 34 (18), 3118-3125, 2018
22018
Auto-encoding NMR chemical shifts from their native vector space to a residue-level biophysical index
G Orlando, D Raimondi, WF Vranken
Nature communications 10 (1), 1-9, 2019
12019
Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome
D Raimondi, G Orlando, F Tabaro, T Lenaerts, M Rooman, Y Moreau, ...
Scientific reports 8 (1), 1-11, 2018
12018
An interpretable low-complexity machine learning framework for robust exome-based in-silico diagnosis of Crohn’s disease patients
D Raimondi, J Simm, A Arany, P Fariselli, I Cleynen, Y Moreau
NAR Genomics and Bioinformatics 2 (1), lqaa011, 2020
2020
DOP31 Serum protein markers for early and differential IBD diagnosis validated by machine learning approaches
S Verstockt, N Verplaetse, D Raimondi, B Verstockt, E Glorieus, ...
Journal of Crohn's and Colitis 14 (Supplement_1), S070-S070, 2020
2020
Accurate prediction of protein beta-aggregation with generalized statistical potentials
G Orlando, A Silva, S Macedo-Ribeiro, D Raimondi, W Vranken
Bioinformatics, 2019
2019
Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis
D Raimondi, G Orlando, WF Vranken, Y Moreau
Scientific reports 9 (1), 1-11, 2019
2019
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Articles 1–19