James Thompson
James Thompson
Research Scientist, Amazon
Verified email at uw.edu
Cited by
Cited by
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules
A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ...
Methods in enzymology 487, 545-574, 2011
Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8
E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009
Crystal structure of a monomeric retroviral protease solved by protein folding game players
F Khatib, F DiMaio, S Cooper, M Kazmierczyk, M Gilski, S Krzywda, ...
Nature structural & molecular biology 18 (10), 1175-1177, 2011
High-resolution comparative modeling with RosettaCM
Y Song, F DiMaio, RYR Wang, D Kim, C Miles, TJ Brunette, J Thompson, ...
Structure 21 (10), 1735-1742, 2013
Structure prediction for CASP8 with all‐atom refinement using Rosetta
S Raman, R Vernon, J Thompson, M Tyka, R Sadreyev, J Pei, D Kim, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 89-99, 2009
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
Stop Hypertension with the Acupuncture Research Program (SHARP) results of a randomized, controlled clinical trial
EA Macklin, PM Wayne, LA Kalish, P Valaskatgis, J Thompson, ...
Hypertension 48 (5), 838-845, 2006
Proteomic analysis of mammalian primary cilia
H Ishikawa, J Thompson, JR Yates Iii, WF Marshall
Current Biology 22 (5), 414-419, 2012
Scientific benchmarks for guiding macromolecular energy function improvement
A Leaver-Fay, MJ O'meara, M Tyka, R Jacak, Y Song, EH Kellogg, ...
Methods in enzymology 523, 109-143, 2013
Radiographic signs of union of scaphoid fractures. An analysis of inter-observer agreement and reproducibility
JJ Dias, M Taylor, J Thompson, IJ Brenkel, PJ Gregg
The Journal of bone and joint surgery. British volume 70 (2), 299-301, 1988
Stalled spliceosomes are a signal for RNAi-mediated genome defense
PA Dumesic, P Natarajan, C Chen, IA Drinnenberg, BJ Schiller, ...
Cell 152 (5), 957-968, 2013
Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein
Y Wang, B Reddy, J Thompson, H Wang, K Noma, JR Yates III, S Jia
Molecular cell 33 (4), 428-437, 2009
REEP3/4 ensure endoplasmic reticulum clearance from metaphase chromatin and proper nuclear envelope architecture
AL Schlaitz, J Thompson, CCL Wong, JR Yates III, R Heald
Developmental cell 26 (3), 315-323, 2013
Five novel loci for inherited hearing loss mapped by SNP-based homozygosity profiles in Palestinian families
H Shahin, T Walsh, AA Rayyan, MK Lee, J Higgins, D Dickel, K Lewis, ...
European Journal of Human Genetics 18 (4), 407-413, 2010
HOPS prevents the disassembly of trans‐SNARE complexes by Sec17p/Sec18p during membrane fusion
H Xu, Y Jun, J Thompson, J Yates, W Wickner
The EMBO Journal 29 (12), 1948-1960, 2010
Energy efficiency improvements by investigating the water flooding management on proton exchange membrane fuel cell (PEMFC)
OS Ijaodola, Z El-Hassan, E Ogungbemi, FN Khatib, T Wilberforce, ...
Energy 179, 246-267, 2019
Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling
I Cajigas, DE Leib, J Cochrane, H Luo, KR Swyter, S Chen, BS Clark, ...
Development 142 (15), 2641-2652, 2015
Modelling and simulation of Proton Exchange Membrane fuel cell with serpentine bipolar plate using MATLAB
T Wilberforce, Z El-Hassan, FN Khatib, A Al Makky, A Baroutaji, JG Carton, ...
International journal of hydrogen energy 42 (40), 25639-25662, 2017
Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast
Y Wang, SP Kallgren, BD Reddy, K Kuntz, L López-Maury, J Thompson, ...
Journal of Biological Chemistry 287 (6), 4386-4393, 2012
Stop Hypertension with the Acupuncture Research Program (SHARP): clinical trial design and screening results
LA Kalish, B Buczynski, P Connell, A Gemmel, C Goertz, EA Macklin, ...
Controlled Clinical Trials 25 (1), 76-103, 2004
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