| Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2 A Kanhere, K Viiri, CC Araújo, J Rasaiyaah, RD Bouwman, WA Whyte, ... Molecular cell 38 (5), 675-688, 2010 | 448 | 2010 |
| T-bet and GATA3 orchestrate Th1 and Th2 differentiation through lineage-specific targeting of distal regulatory elements A Kanhere, A Hertweck, U Bhatia, MR Gökmen, E Perucha, I Jackson, ... Nature communications 3 (1), 1268, 2012 | 381 | 2012 |
| Predicting transcription factor affinities to DNA from a biophysical model HG Roider, A Kanhere, T Manke, M Vingron Bioinformatics 23 (2), 134-141, 2007 | 243 | 2007 |
| Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes A Kanhere, M Bansal Nucleic acids research 33 (10), 3165-3175, 2005 | 181 | 2005 |
| A novel method for prokaryotic promoter prediction based on DNA stability A Kanhere, M Bansal BMC bioinformatics 6, 1-10, 2005 | 134 | 2005 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 133 | 2020 |
| Modulation of enhancer looping and differential gene targeting by Epstein-Barr virus transcription factors directs cellular reprogramming MJ McClellan, CD Wood, O Ojeniyi, TJ Cooper, A Kanhere, A Arvey, ... PLoS pathogens 9 (9), e1003636, 2013 | 113 | 2013 |
| Horizontal gene transfers in prokaryotes show differential preferences for metabolic and translational genes A Kanhere, M Vingron BMC Evolutionary Biology 9, 1-13, 2009 | 64 | 2009 |
| Downregulation of integrin receptor-signaling genes by Epstein-Barr virus EBNA 3C via promoter-proximal and-distal binding elements MJ McClellan, S Khasnis, CD Wood, RD Palermo, SN Schlick, ... Journal of virology 86 (9), 5165-5178, 2012 | 59 | 2012 |
| Genome-wide regulatory analysis reveals that T-bet controls Th17 lineage differentiation through direct suppression of IRF4 MR Gökmen, R Dong, A Kanhere, N Powell, E Perucha, I Jackson, ... The Journal of Immunology 191 (12), 5925-5932, 2013 | 58 | 2013 |
| CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses HG Roider, B Lenhard, A Kanhere, SA Haas, M Vingron Nucleic acids research 37 (19), 6305-6315, 2009 | 53 | 2009 |
| Micro-Fresnel-zone-plate array on flexible substrate for large field-of-view and focus scanning MJ Moghimi, J Fernandes, A Kanhere, H Jiang Scientific reports 5 (1), 15861, 2015 | 49 | 2015 |
| Genome-wide analyses of Zta binding to the Epstein-Barr virus genome reveals interactions in both early and late lytic cycles and an epigenetic switch leading to an altered … S Ramasubramanyan, A Kanhere, K Osborn, K Flower, RG Jenner, ... Journal of virology 86 (23), 12494-12502, 2012 | 40 | 2012 |
| IL-2 regulates expression of C-MAF in human CD4 T cells A Rani, B Afzali, A Kelly, L Tewolde-Berhan, M Hackett, AS Kanhere, ... The Journal of Immunology 187 (7), 3721-3729, 2011 | 36 | 2011 |
| An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data A Kanhere, M Bansal Nucleic acids research 31 (10), 2647-2658, 2003 | 33 | 2003 |
| Identification of RNA–protein interactions through in vitro rna pull-down assays C Barnes, A Kanhere Polycomb Group Proteins: Methods and Protocols, 99-113, 2016 | 31 | 2016 |
| Regulation of leukocytes by TspanC8 tetraspanins and the “molecular scissor” ADAM10 AL Matthews, CZ Koo, J Szyroka, N Harrison, A Kanhere, MG Tomlinson Frontiers in immunology 9, 1451, 2018 | 27 | 2018 |
| 8q24. 21 locus: a paradigm to link non-coding RNAs, genome polymorphisms and cancer C Wilson, A Kanhere International journal of molecular sciences 22 (3), 1094, 2021 | 22 | 2021 |
| A novel form of JARID2 is required for differentiation in lineage‐committed cells D Al‐Raawi, R Jones, S Wijesinghe, J Halsall, M Petric, S Roberts, ... The EMBO journal 38 (3), e98449, 2019 | 22 | 2019 |
| Exon junction complex proteins bind nascent transcripts independently of pre-mRNA splicing in Drosophila melanogaster SR Choudhury, AK Singh, T McLeod, M Blanchette, B Jang, P Badenhorst, ... Elife 5, e19881, 2016 | 22 | 2016 |
