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Jeremy Goecks
Jeremy Goecks
Assistant Center Director, Research Informatics at the Moffitt Cancer Center
Verified email at moffitt.org - Homepage
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Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
53262018
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
J Goecks, A Nekrutenko, J Taylor, TG Team
Genome Biol 11 (8), R86, 2010
41892010
Method and system for usage analyzer that determines user accessed sources, indexes data subsets, and associated metadata, processing implicit queries based on potential …
ST Dumais, EJ Horvitz, EB Cutrell, JJ Cadiz, G Jancke, RK Sarin, ...
US Patent 7,162,473, 2007
6252007
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
4052020
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
3592020
How machine learning will transform biomedicine
J Goecks, V Jalili, LM Heiser, JW Gray
Cell 181 (1), 92-101, 2020
3302020
Learning users' interests by unobtrusively observing their normal behavior
J Goecks, J Shavlik
Proceedings of the 5th international conference on Intelligent user …, 2000
2942000
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
2412022
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell systems 6 (6), 631-635, 2018
1312018
Augmenting shared personal calendars
J Tullio, J Goecks, ED Mynatt, DH Nguyen
Proceedings of the 15th annual ACM symposium on User interface software and …, 2002
1162002
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ...
Nature methods 19 (3), 311-315, 2022
1112022
A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer
AH Wagner, B Walsh, G Mayfield, D Tamborero, D Sonkin, K Krysiak, ...
Nature genetics 52 (4), 448-457, 2020
1062020
Charitable technologies: Opportunities for collaborative computing in nonprofit fundraising
J Goecks, A Voida, S Voida, ED Mynatt
Proceedings of the 2008 ACM conference on Computer supported cooperative …, 2008
992008
Integrative approach reveals composition of endoparasitoid wasp venoms
J Goecks, NT Mortimer, JA Mobley, GJ Bowersock, J Taylor, TA Schlenke
PloS one 8 (5), e64125, 2013
952013
Leukocyte heterogeneity in pancreatic ductal adenocarcinoma: phenotypic and spatial features associated with clinical outcome
SM Liudahl, CB Betts, S Sivagnanam, V Morales-Oyarvide, A Da Silva, ...
Cancer discovery 11 (8), 2014-2031, 2021
852021
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
782022
Parasitoid wasp venom SERCA regulates Drosophila calcium levels and inhibits cellular immunity
NT Mortimer, J Goecks, BZ Kacsoh, JA Mobley, GJ Bowersock, J Taylor, ...
Proceedings of the National Academy of Sciences 110 (23), 9427-9432, 2013
782013
T.(2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
J Goecks, A Nekrutenko, J Taylor
Genome Biology 11 (8), R86, 0
62
High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers
G Banik, CB Betts, SM Liudahl, S Sivagnanam, R Kawashima, T Cotechini, ...
Methods in enzymology 635, 1-20, 2020
612020
Leveraging social networks for information sharing
J Goecks, ED Mynatt
Proceedings of the 2004 ACM conference on Computer supported cooperative …, 2004
592004
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Articles 1–20