Emily R Miraldi
Citeras av
Citeras av
Sparse and compositionally robust inference of microbial ecological networks
ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau
PLoS computational biology 11 (5), 2015
An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses
DR Sano, T, Huang, W, Hall, JA, Chen, A, Gravzy, SJ, Lee, J, Ziel, J ...
Cell 163 (2), 381-393, 2015
CX3CR1+ mononuclear phagocytes support colitis-associated innate lymphoid cell production of IL-22
RS Longman, GE Diehl, DA Victorio, JR Huh, C Galan, ER Miraldi, ...
Journal of Experimental Medicine 211 (8), 1571-1583, 2014
DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions
W Huang, B Thomas, RA Flynn, SJ Gavzy, L Wu, SV Kim, JA Hall, ...
Nature 528 (7583), 517-522, 2015
Allosteric models for cooperative polymerization of linear polymers
ER Miraldi, PJ Thomas, L Romberg
Biophysical journal 95 (5), 2470-2486, 2008
Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation
K Karwacz, ER Miraldi, M Pokrovskii, A Madi, N Yosef, I Wortman, X Chen, ...
Nature immunology 18 (4), 412, 2017
Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth
PH Huang, ER Miraldi, AM Xu, VA Kundukulam, AM Del Rosario, ...
Molecular BioSystems 6 (7), 1227-1237, 2010
4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments
R Raviram, PP Rocha, CL Muller, R Miraldi, Emily, S Badri, Y Fu, ...
PLoS Computational Biology 12 (3), 2016
Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells
ER Miraldi, M Pokrovskii, A Watters, DM Castro, N De Veaux, JA Hall, ...
Genome research 29 (3), 449-463, 2019
A damage-independent role for 53BP1 that impacts break order and Igh architecture during class switch recombination
PP Rocha, R Raviram, Y Fu, JH Kim, VM Luo, A Aljoufi, E Swanzey, ...
Cell reports 16 (1), 48-55, 2016
Multi-study inference of regulatory networks for more accurate models of gene regulation
DM Castro, NR De Veaux, ER Miraldi, R Bonneau
PLoS computational biology 15 (1), e1006591, 2019
Genotet: An interactive web-based visual exploration framework to support validation of gene regulatory networks
B Yu, H Doraiswamy, X Chen, E Miraldi, ML Arrieta-Ortiz, C Hafemeister, ...
IEEE transactions on visualization and computer graphics 20 (12), 1903-1912, 2014
Characterization of transcriptional regulatory networks that promote and restrict identities and functions of intestinal innate lymphoid cells
M Pokrovskii, JA Hall, DE Ochayon, R Yi, NS Chaimowitz, H Seelamneni, ...
Immunity 51 (1), 185-197. e6, 2019
Molecular network analysis of phosphotyrosine and lipid metabolism in hepatic PTP1b deletion mice
ER Miraldi, H Sharfi, RH Friedline, H Johnson, T Zhang, KS Lau, HJ Ko, ...
Integrative Biology 5 (7), 940-963, 2013
Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate
R Raviram, PP Rocha, VM Luo, E Swanzey, ER Miraldi, EB Chuong, ...
Genome biology 19 (1), 1-19, 2018
Retraction Note: DDX5 and its associated lncRNA Rmrp modulate TH 17 cell effector functions
W Huang, B Thomas, RA Flynn, SJ Gavzy, L Wu, SV Kim, JA Hall, ...
Nature 562 (7725), 150-150, 2018
Genome-wide discovery of SLE genetic risk variant allelic enhancer activity
X Lu, X Chen, C Forney, O Donmez, D Miller, S Parameswaran, T Hong, ...
bioRxiv, 2020
Role for B-cell lymphoma 6 in intestinal innate lymphoid cell homeostasis and inflammatory disease
DE Ohayon, H Seelamneni, NS Chaimowitz, T Cazares, A Waddell, ...
The Journal of Immunology 204 (1 Supplement), 84.13-84.13, 2020
Hybrid gene origination creates human-virus chimeric proteins during infection
J Sook Yuin Ho, M Angel, Y Ma, E Sloan, G Wang, C Martinez-Romero, ...
Cell, 2020
Alternative activation of macrophages is accompanied by chromatin remodeling and short-term dampening of macrophage secondary response
M San Tang, ER Miraldi, NM Girgis, RA Bonneau
bioRxiv, 327023, 2020
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Artiklar 1–20