| MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics AT Kong, FV Leprevost, DM Avtonomov, D Mellacheruvu, AI Nesvizhskii Nature methods 14 (5), 513-520, 2017 | 234 | 2017 |
| Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0 PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ... Nature protocols 11 (1), 102-117, 2016 | 162 | 2016 |
| BioContainers: an open-source and community-driven framework for software standardization F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics 33 (16), 2580-2582, 2017 | 111 | 2017 |
| Discovering and linking public omics data sets using the Omics Discovery Index Y Perez-Riverol, M Bai, F da Veiga Leprevost, S Squizzato, YM Park, ... Nature biotechnology 35 (5), 406-409, 2017 | 83 | 2017 |
| Ten simple rules for taking advantage of Git and GitHub Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ... PLoS computational biology 12 (7), e1004947, 2016 | 72 | 2016 |
| Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 180 (1), 207, 2020 | 64 | 2020 |
| Reevaluating the Trypanosoma cruzi proteomic map: The shotgun description of bloodstream trypomastigotes GVF Brunoro, MA Caminha, AT da Silva Ferreira, F da Veiga Leprevost, ... Journal of proteomics 115, 58-65, 2015 | 44 | 2015 |
| On best practices in the development of bioinformatics software FV Leprevost, VC Barbosa, EL Francisco, Y Perez-Riverol, PC Carvalho Frontiers in genetics 5, 199, 2014 | 40 | 2014 |
| PepExplorer: a similarity-driven tool for analyzing de novo sequencing results FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates, ... Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014 | 34 | 2014 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 22 | 2020 |
| Computational Proteomics Pitfalls and Challenges: HavanaBioinfo 2012 Workshop Report Y Perez-Riverol, H Hermjakob, O Kohlbacher, L Martens, D Creasy, J Cox, ... Journal of Proteomics, 2013 | 21 | 2013 |
| Effectively addressing complex proteomic search spaces with peptide spectrum matching D Borges, Y Perez-Riverol, FCS Nogueira, GB Domont, J Noda, ... Bioinformatics, 2013 | 19 | 2013 |
| Venomous extract protein profile of Brazilian tarantula Grammostola iheringi: searching for potential biotechnological applications MH Borges, SG Figueiredo, FV Leprevost, ME De Lima, MN Cordeiro, ... Journal of Proteomics 136, 35-47, 2016 | 17 | 2016 |
| A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom D Trevisan-Silva, AV Bednaski, JSG Fischer, SS Veiga, N Bandeira, ... Scientific data 4, 170090, 2017 | 15 | 2017 |
| The Ewing sarcoma secretome and its response to activation of Wnt/beta-catenin signaling AG Hawkins, V Basrur, F da Veiga Leprevost, E Pedersen, C Sperring, ... Molecular & Cellular Proteomics 17 (5), 901-912, 2018 | 14 | 2018 |
| Recommendations for the packaging and containerizing of bioinformatics software G Bjorn, S Olivier, P Moreno, M Hervé, D Søndergaard, R Hannes, S Timo, ... F1000Research 7, 2019 | 12* | 2019 |
| Quantitative proteomic analysis of the Saccharomyces cerevisiae industrial strains CAT-1 and PE-2 RM Santos, FCS Nogueira, AA Brasil, PC Carvalho, FV Leprevost, ... Journal of proteomics 151, 114-121, 2017 | 12 | 2017 |
| Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors SI Djomehri, ME Gonzalez, F da Veiga Leprevost, SR Tekula, HY Chang, ... Nature communications 11 (1), 1-15, 2020 | 9 | 2020 |
| Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics FV Leprevost, DB Lima, J Crestani, Y Perez-Riverol, N Zanchin, ... Journal of proteomics 89, 179-182, 2013 | 9 | 2013 |
| Philosopher: a versatile toolkit for shotgun proteomics data analysis F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ... Nature methods 17 (9), 869-870, 2020 | 7 | 2020 |
Paulo Costa CarvalhoCarlos Chagas Institute, Fiocruz - Paraná, BrazilVerified email at pcarvalho.com
