Michael MacCoss
Michael MacCoss
Professor of Genome Sciences, University of Washington
Verified email at uw.edu - Homepage
Title
Cited by
Cited by
Year
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
B MacLean, DM Tomazela, N Shulman, M Chambers, GL Finney, ...
Bioinformatics 26 (7), 966-968, 2010
27472010
Semi-supervised learning for peptide identification from shotgun proteomics datasets
L Käll, JD Canterbury, J Weston, WS Noble, MJ MacCoss
Nature methods 4 (11), 923-925, 2007
13202007
A cross-platform toolkit for mass spectrometry and proteomics
MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ...
Nature biotechnology 30 (10), 918-920, 2012
12892012
Aminoglycoside antibiotics induce bacterial biofilm formation
LR Hoffman, DA D'Argenio, MJ MacCoss, Z Zhang, RA Jones, SI Miller
Nature 436 (7054), 1171-1175, 2005
12302005
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
9132010
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
7922012
A method for the comprehensive proteomic analysis of membrane proteins
CC Wu, MJ MacCoss, KE Howell, JR Yates
Nature biotechnology 21 (5), 532-538, 2003
7652003
Shotgun identification of protein modifications from protein complexes and lens tissue
MJ MacCoss, WH McDonald, A Saraf, R Sadygov, JM Clark, JJ Tasto, ...
Proceedings of the National Academy of Sciences 99 (12), 7900-7905, 2002
6702002
Molecular architecture and assembly of the DDB1–CUL4A ubiquitin ligase machinery
S Angers, T Li, X Yi, MJ MacCoss, RT Moon, N Zheng
Nature 443 (7111), 590-593, 2006
5782006
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
L Käll, JD Storey, MJ MacCoss, WS Noble
Journal of proteome research 7 (01), 29-34, 2008
5742008
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis
CC Wu, MJ MacCoss, KE Howell, DE Matthews, JR Yates
Analytical chemistry 76 (17), 4951-4959, 2004
4642004
Probability-based validation of protein identifications using a modified SEQUEST algorithm
MJ MacCoss, CC Wu, JR Yates
Analytical chemistry 74 (21), 5593-5599, 2002
4542002
Wilms tumor suppressor WTX negatively regulates WNT/ß-catenin signaling
MB Major, ND Camp, JD Berndt, XH Yi, SJ Goldenberg, C Hubbert, ...
science 316 (5827), 1043-1046, 2007
4302007
The KLHL12–Cullin-3 ubiquitin ligase negatively regulates the Wnt–β-catenin pathway by targeting Dishevelled for degradation
S Angers, CJ Thorpe, TL Biechele, SJ Goldenberg, N Zheng, ...
Nature cell biology 8 (4), 348-357, 2006
3932006
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS Genet 6 (2), e1000841, 2010
3872010
Overexpression of catalase targeted to mitochondria attenuates murine cardiac aging
DF Dai, LF Santana, M Vermulst, DM Tomazela, MJ Emond, MJ MacCoss, ...
Circulation 119 (21), 2789, 2009
3752009
Using i RT, a normalized retention time for more targeted measurement of peptides
C Escher, L Reiter, B MacLean, R Ossola, F Herzog, J Chilton, ...
Proteomics 12 (8), 1111-1121, 2012
3602012
Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation
B Schilling, MJ Rardin, BX MacLean, AM Zawadzka, BE Frewen, ...
Molecular & Cellular Proteomics 11 (5), 202-214, 2012
3342012
The PINK1–Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo
ES Vincow, G Merrihew, RE Thomas, NJ Shulman, RP Beyer, ...
Proceedings of the National Academy of Sciences 110 (16), 6400-6405, 2013
3292013
MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ...
Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004
3252004
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