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Charlotte Capitanchik
Charlotte Capitanchik
Postdoctoral researcher, UK DRI at King's College London
Verifierad e-postadress på kcl.ac.uk
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RNA modifications detection by comparative Nanopore direct RNA sequencing
A Leger, PP Amaral, L Pandolfini, C Capitanchik, F Capraro, V Miano, ...
Nature communications 12 (1), 7198, 2021
2502021
Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP
K Kuret, AG Amalietti, DM Jones, C Capitanchik, J Ule
Genome biology 23 (1), 191, 2022
212022
How Do You Identify m6 A Methylation in Transcriptomes at High Resolution? A Comparison of Recent Datasets
C Capitanchik, P Toolan-Kerr, NM Luscombe, J Ule
Frontiers in genetics 11, 398, 2020
202020
Ultraplex: A rapid, flexible, all-in-one fastq demultiplexer
OG Wilkins, C Capitanchik, NM Luscombe, J Ule
Wellcome Open Research 6, 2021
152021
Analysis of RNA-Seq datasets reveals enrichment of tissue-specific splice variants for nuclear envelope proteins
C Capitanchik, CR Dixon, SK Swanson, L Florens, ARW Kerr, ...
Nucleus 9 (1), 410-430, 2018
142018
N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in yeast
RA Varier, T Sideri, C Capitanchik, Z Manova, E Calvani, A Rossi, ...
Elife 11, e84034, 2022
13*2022
psiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation
LM Strittmatter, C Capitanchik, AJ Newman, M Hallegger, CM Norman, ...
Nature Communications 12 (1), 1488, 2021
112021
Identification of RNA helicases with unwinding activity on angiogenin-processed tRNAs
A Drino, L König, C Capitanchik, N Sanadgol, E Janisiw, T Rappol, ...
Nucleic Acids Research 51 (3), 1326-1352, 2023
82023
m6A-ELISA, a simple method for quantifying N6-methyladenosine from mRNA populations
I Ensinck, T Sideri, M Modic, C Capitanchik, C Vivori, P Toolan-Kerr, ...
RNA 29 (5), 705-712, 2023
72023
clipplotr—a comparative visualization and analysis tool for CLIP data
AM Chakrabarti, C Capitanchik, J Ule, NM Luscombe
RNA 29 (6), 715-723, 2023
62023
Flow: a web platform and open database to analyse, store, curate and share bioinformatics data at scale
C Capitanchik, S Ireland, A Harston, C Cheshire, DM Jones, FCY Lee, ...
bioRxiv, 2023.08. 22.544179, 2023
12023
nf-core/clipseq-a robust Nextflow pipeline for comprehensive CLIP data analysis
C West, C Capitanchik, C Cheshire, NM Luscombe, A Chakrabarti, J Ule
Wellcome Open Research 8, 2023
12023
Interrogation of RNA-protein interaction dynamics in bacterial growth
M Monti, R Herman, L Mancini, C Capitanchik, K Davey, CS Dawson, ...
Molecular Systems Biology, 1-17, 2024
2024
Computational studies of RNA modification-dependent RNA binding protein networks
C Capitanchik
UCL (University College London), 2022
2022
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Artiklar 1–14