Follow
Paolo Ribeca
Paolo Ribeca
Biomathematics and Statistics Scotland, UK
Verified email at bioss.ac.uk
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
138262012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
54742012
The tomato genome sequence provides insights into fleshy fruit evolution
T Tomato Genome Consortium
Nature 485 (7400), 635, 2012
31862012
Transcriptome and genome sequencing uncovers functional variation in humans
T Lappalainen, M Sammeth, MR Friedländer, PAC ‘t Hoen, J Monlong, ...
Nature 501 (7468), 506-511, 2013
20422013
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
14422011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
7652013
The GEM mapper: fast, accurate and versatile alignment by filtration
S Marco-Sola, M Sammeth, R Guigó, P Ribeca
Nature methods 9 (12), 1185-1188, 2012
6412012
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ...
Nature methods 10 (12), 1185-1191, 2013
5902013
Fast computation and applications of genome mappability
T Derrien, J Estellé, S Marco Sola, DG Knowles, E Raineri, R Guigó, ...
PloS one 7 (1), e30377, 2012
5652012
Modelling and simulating generic RNA-Seq experiments with the flux simulator
T Griebel, B Zacher, P Ribeca, E Raineri, V Lacroix, R Guigó, M Sammeth
Nucleic acids research 40 (20), 10073-10083, 2012
3442012
Effect of predicted protein-truncating genetic variants on the human transcriptome
MA Rivas, M Pirinen, DF Conrad, M Lek, EK Tsang, KJ Karczewski, ...
Science 348 (6235), 666-669, 2015
3412015
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
TS Alioto, I Buchhalter, S Derdak, B Hutter, MD Eldridge, E Hovig, ...
Nature communications 6 (1), 1-13, 2015
3342015
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
PAC 't Hoen, MR Friedländer, J Almlöf, M Sammeth, I Pulyakhina, ...
Nature biotechnology 31 (11), 1015-1022, 2013
2682013
Genome sequence of the olive tree, Olea europaea
F Cruz, I Julca, J Gómez-Garrido, D Loska, M Marcet-Houben, E Cano, ...
Gigascience 5 (1), 29, 2016
2112016
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17, 1-19, 2016
1672016
From useful algorithms for slowly convergent series to physical predictions based on divergent perturbative expansions
E Caliceti, M Meyer-Hermann, P Ribeca, A Surzhykov, UD Jentschura
Physics reports 446 (1-3), 1-96, 2007
1402007
Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence
T Alioto, KG Alexiou, A Bardil, F Barteri, R Castanera, F Cruz, A Dhingra, ...
The Plant Journal 101 (2), 455-472, 2020
1082020
Networks of Ethereum Non-Fungible Tokens: A graph-based analysis of the ERC-721 ecosystem
S Casale-Brunet, P Ribeca, P Doyle, M Mattavelli
2021 IEEE International Conference on Blockchain (Blockchain), 188-195, 2021
662021
Evidence for transcript networks composed of chimeric RNAs in human cells
S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ...
PLoS One 7 (1), e28213, 2012
652012
Differential gene regulation underlies variation in melanic plumage coloration in the dark‐eyed junco (Junco hyemalis)
M Abolins‐Abols, E Kornobis, P Ribeca, K Wakamatsu, MP Peterson, ...
Molecular Ecology 27 (22), 4501-4515, 2018
532018
The system can't perform the operation now. Try again later.
Articles 1–20