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Arpith Jacob
Arpith Jacob
Unknown affiliation
Verified email at cse.wustl.edu
Title
Cited by
Cited by
Year
Method and apparatus for performing similarity searching on a data stream with respect to a query string
JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ...
US Patent 7,917,299, 2011
2302011
Active memory cube: A processing-in-memory architecture for exascale systems
R Nair, SF Antao, C Bertolli, P Bose, JR Brunheroto, T Chen, CY Cher, ...
IBM Journal of Research and Development 59 (2/3), 17: 1-17: 14, 2015
2062015
Method and Apparatus for Protein Sequence Alignment using FPGA Devices
R Chamberlain, J Buhler, A Jacob, J Lancaster, B Harris
US Patent App. 11/836,947, 2008
1322008
Biosequence Similarity Search on the Mercury System
P Krishnamurthy, J Buhler, R Chamberlain, M Franklin, K Gyang, A Jacob, ...
The Journal of VLSI Signal Processing Systems for Signal, Image, and Video …, 2007
1132007
Mercury BLASTP: Accelerating protein sequence alignment
A Jacob, J Lancaster, J Buhler, B Harris, RD Chamberlain
ACM Transactions on Reconfigurable Technology and Systems (TRETS) 1 (2), 1-44, 2008
942008
Method and apparatus for performing similarity searching
JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ...
US Patent 8,515,682, 2013
822013
FPGA-accelerated seed generation in Mercury BLASTP
A Jacob, J Lancaster, J Buhler, RD Chamberlain
15th Annual IEEE Symposium on Field-Programmable Custom Computing Machines …, 2007
792007
Data access optimization in a processing-in-memory system
Z Sura, A Jacob, T Chen, B Rosenburg, O Sallenave, C Bertolli, S Antao, ...
Proceedings of the 12th ACM International Conference on Computing Frontiers, 1-8, 2015
782015
Coordinating GPU threads for OpenMP 4.0 in LLVM
C Bertolli, SF Antao, AE Eichenberger, KOBZ Sura, AC Jacob, T Chen, ...
2014 LLVM Compiler Infrastructure in HPC, 12-21, 2014
752014
Hardware technologies for high-performance data-intensive computing
M Gokhale, J Cohen, A Yoo, WM Miller, A Jacob, C Ulmer, R Pearce
Computer 41 (4), 60-68, 2008
732008
Mercury BLASTN: Faster DNA sequence comparison using a streaming hardware architecture
JD Buhler, JM Lancaster, AC Jacob, RD Chamberlain
Proc. of Reconfigurable Systems Summer Institute, 2007
682007
Offloading support for OpenMP in Clang and LLVM
SF Antao, A Bataev, AC Jacob, GT Bercea, AE Eichenberger, G Rokos, ...
2016 Third Workshop on the LLVM Compiler Infrastructure in HPC (LLVM-HPC), 1-11, 2016
662016
A banded Smith-Waterman FPGA accelerator for Mercury BLASTP
B Harris, AC Jacob, JM Lancaster, J Buhler, RD Chamberlain
2007 International Conference on Field Programmable Logic and Applications …, 2007
642007
Integrating GPU support for OpenMP offloading directives into Clang
C Bertolli, SF Antao, GT Bercea, AC Jacob, AE Eichenberger, T Chen, ...
Proceedings of the Second Workshop on the LLVM Compiler Infrastructure in …, 2015
532015
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
A Jacob, J Buhler, RD Chamberlain
2008 International Conference on Application-Specific Systems, Architectures …, 2008
462008
Preliminary results in accelerating profile HMM search on FPGAs
AC Jacob, JM Lancaster, JD Buhler, RD Chamberlain
2007 IEEE International Parallel and Distributed Processing Symposium, 1-8, 2007
462007
Method and apparatus for performing similarity searching
JD Buhler, RD Chamberlain, MA Franklin, K Gyang, AC Jacob, ...
US Patent 9,547,680, 2017
412017
Performance analysis of OpenMP on a GPU using a CORAL proxy application
GT Bercea, C Bertolli, SF Antao, AC Jacob, AE Eichenberger, T Chen, ...
Proceedings of the 6th International Workshop on Performance Modeling …, 2015
352015
Performance analysis and optimization of Clang's OpenMP 4.5 GPU support
M Martineau, S McIntosh-Smith, C Bertolli, AC Jacob, SF Antao, ...
2016 7th International Workshop on Performance Modeling, Benchmarking and …, 2016
242016
Rapid RNA folding: analysis and acceleration of the Zuker recurrence
AC Jacob, JD Buhler, RD Chamberlain
2010 18th IEEE Annual International Symposium on Field-Programmable Custom …, 2010
232010
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