David Minh
Title
Cited by
Cited by
Year
Remarkable loop flexibility in avian influenza N1 and its implications for antiviral drug design
RE Amaro, DDL Minh, LS Cheng, WM Lindstrom, AJ Olson, JH Lin, WW Li, ...
Journal of the American Chemical Society 129 (25), 7764-7765, 2007
1672007
The influence of macromolecular crowding on HIV-1 protease internal dynamics
DDL Minh, C Chang, J Trylska, V Tozzini, JA McCammon
Journal of the American Chemical Society 128 (18), 6006-6007, 2006
1042006
Optimized free energies from bidirectional single-molecule force spectroscopy
DDL Minh, AB Adib
Physical review letters 100 (18), 180602, 2008
1032008
Molecular crowding inhibits intramolecular breathing motions in proteins
L Makowski, DJ Rodi, S Mandava, DDL Minh, DB Gore, RF Fischetti
Journal of molecular biology 375 (2), 529-546, 2008
1012008
Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation
JP Nilmeier, GE Crooks, DDL Minh, JD Chodera
Proceedings of the National Academy of Sciences 108 (45), E1009-E1018, 2011
862011
Optimal estimators and asymptotic variances for nonequilibrium path-ensemble averages
DDL Minh, JD Chodera
The Journal of chemical physics 131 (13), 134110, 2009
612009
The entropic cost of protein-protein association: a case study on acetylcholinesterase binding to fasciculin-2
DDL Minh, JM Bui, C Chang, T Jain, JMJ Swanson, JA McCammon
Biophysical journal 89 (4), L25-L27, 2005
512005
Springs and speeds in free energy reconstruction from irreversible single-molecule pulling experiments
DDL Minh, JA McCammon
The Journal of Physical Chemistry B 112 (19), 5892-5897, 2008
402008
Method to predict crowding effects by postprocessing molecular dynamics trajectories: application to the flap dynamics of HIV-1 protease
S Qin, DDL Minh, JA McCammon, HX Zhou
The journal of physical chemistry letters 1 (1), 107-110, 2010
392010
Understanding the Hastings algorithm
DDL Minh, DL Minh
Communications in Statistics-Simulation and Computation 44 (2), 332-349, 2015
362015
X‐ray solution scattering studies of the structural diversity intrinsic to protein ensembles
L Makowski, D Gore, S Mandava, D Minh, S Park, DJ Rodi, RF Fischetti
Biopolymers 95 (8), 531-542, 2011
302011
Free-energy reconstruction from experiments performed under different biasing programs
DDL Minh
Physical Review E 74 (6), 061120, 2006
262006
Path integral analysis of Jarzynski’s equality: Analytical results
DDL Minh, AB Adib
Physical Review E 79 (2), 021122, 2009
242009
Implicit ligand theory: Rigorous binding free energies and thermodynamic expectations from molecular docking
DDL Minh
The Journal of chemical physics 137 (10), 104106, 2012
232012
Characterization of the Pseudomonas aeruginosa NQR complex, a bacterial proton pump with roles in autopoisoning resistance
DA Raba, M Rosas-Lemus, WM Menzer, C Li, X Fang, P Liang, K Tuz, ...
Journal of Biological Chemistry 293 (40), 15664-15677, 2018
212018
Estimating equilibrium ensemble averages using multiple time slices from driven nonequilibrium processes: Theory and application to free energies, moments, and thermodynamic …
DDL Minh, JD Chodera
The Journal of chemical physics 134 (2), 024111, 2011
212011
Absolute binding free energies between T4 lysozyme and 141 small molecules: calculations based on multiple rigid receptor configurations
B Xie, TH Nguyen, DDL Minh
Journal of chemical theory and computation 13 (6), 2930-2944, 2017
202017
Wide-angle X-ray solution scattering for protein-ligand binding: multivariate curve resolution with Bayesian confidence intervals
DDL Minh, L Makowski
Biophysical journal 104 (4), 873-883, 2013
202013
Identification of the catalytic ubiquinone-binding site of Vibrio cholerae sodium-dependent NADH dehydrogenase: a novel ubiquinone-binding motif
K Tuz, C Li, X Fang, DA Raba, P Liang, DDL Minh, O Juárez
Journal of Biological Chemistry 292 (7), 3039-3048, 2017
162017
Multidimensional potentials of mean force from biased experiments along a single coordinate
DDL Minh
The Journal of Physical Chemistry B 111 (16), 4137-4140, 2007
152007
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Articles 1–20