|The genome of the natural genetic engineer Agrobacterium tumefaciens C58|
DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ...
science 294 (5550), 2317-2323, 2001
|Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer|
M Li, C Balch, JS Montgomery, M Jeong, JH Chung, P Yan, THM Huang, ...
BMC medical genomics 2 (1), 1-13, 2009
|MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression|
S Nam, M Li, K Choi, C Balch, S Kim, KP Nephew
Nucleic acids research 37 (suppl_2), W356-W362, 2009
|Oncogenic ETS proteins mimic activated RAS/MAPK signaling in prostate cells|
PC Hollenhorst, MW Ferris, MA Hull, H Chae, S Kim, BJ Graves
Genes & development 25 (20), 2147-2157, 2011
|Prognostic DNA methylation biomarkers in ovarian cancer|
SH Wei, C Balch, HH Paik, YS Kim, RL Baldwin, S Liyanarachchi, L Li, ...
Clinical Cancer Research 12 (9), 2788-2794, 2006
|Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance|
F Xin, M Li, C Balch, M Thomson, M Fan, Y Liu, SM Hammond, S Kim, ...
Bioinformatics 25 (4), 430-434, 2009
|CpG island shore methylation regulates caveolin-1 expression in breast cancer|
X Rao, J Evans, H Chae, J Pilrose, S Kim, P Yan, RL Huang, HC Lai, ...
Oncogene 32 (38), 4519-4528, 2013
|De novo identification of LTR retrotransposons in eukaryotic genomes|
M Rho, JH Choi, S Kim, M Lynch, H Tang
BMC genomics 8 (1), 1-16, 2007
|New anti-cancer strategies: epigenetic therapies and biomarkers|
C Balch, JS Montgomery, HI Paik, S Kim, TH Huang, KP Nephew
Front Biosci 10 (1), 897-931, 2005
|A fast multiple string pattern matching algorithm|
S Kim, Y Kim
Proceedings of 17th AoM/IAoM Conference on Computer Science, 44-49, 1999
|Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer|
JK Rhee, K Kim, H Chae, J Evans, P Yan, BT Zhang, J Gray, P Spellman, ...
Nucleic acids research 41 (18), 8464-8474, 2013
|Hybrid approach of relation network and localized graph convolutional filtering for breast cancer subtype classification|
S Rhee, S Seo, S Kim
IJCAI 2018, arXiv preprint arXiv:1711.05859, 2017
|Genome comparisons based on profiles of metabolic pathways|
L Liao, S Kim, JF Tomb
Proceedings of the 6th International Conference on Knowledge-Based …, 2002
|Recurrent fusion transcripts detected by whole‐transcriptome sequencing of 120 primary breast cancer samples|
J Kim, S Kim, S Ko, Y In, HG Moon, SK Ahn, MK Kim, M Lee, JH Hwang, ...
Genes, Chromosomes and Cancer 54 (11), 681-691, 2015
|Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing|
JH Choi, Y Li, J Guo, L Pei, TA Rauch, RS Kramer, SL Macmil, GB Wiley, ...
PLoS One 5 (9), e13020, 2010
|BioVLAB-MMIA-NGS: microRNA–mRNA integrated analysis using high-throughput sequencing data|
H Chae, S Rhee, KP Nephew, S Kim
Bioinformatics 31 (2), 265-267, 2015
|A machine-learning approach to combined evidence validation of genome assemblies|
JH Choi, S Kim, H Tang, J Andrews, DG Gilbert, JK Colbourne
Bioinformatics 24 (6), 744-750, 2008
|AMASS: A structured pattern matching approach to shotgun sequence assembly|
S Kim, AM Segre
Journal of Computational Biology 6 (2), 163-186, 1999
|ModGen: Theorem proving by model generation|
S Kim, H Zhang
AAAI, 162-167, 1994
|DeepFam: deep learning based alignment-free method for protein family modeling and prediction|
S Seo, M Oh, Y Park, S Kim
Bioinformatics 34 (13), i254-i262, 2018