| The genome of the natural genetic engineer Agrobacterium tumefaciens C58 DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ... science 294 (5550), 2317-2323, 2001 | 895 | 2001 |
| Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer M Li, C Balch, JS Montgomery, M Jeong, JH Chung, P Yan, THM Huang, ... BMC medical genomics 2 (1), 1-13, 2009 | 194 | 2009 |
| MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression S Nam, M Li, K Choi, C Balch, S Kim, KP Nephew Nucleic acids research 37 (suppl_2), W356-W362, 2009 | 182 | 2009 |
| Oncogenic ETS proteins mimic activated RAS/MAPK signaling in prostate cells PC Hollenhorst, MW Ferris, MA Hull, H Chae, S Kim, BJ Graves Genes & development 25 (20), 2147-2157, 2011 | 157 | 2011 |
| Prognostic DNA methylation biomarkers in ovarian cancer SH Wei, C Balch, HH Paik, YS Kim, RL Baldwin, S Liyanarachchi, L Li, ... Clinical Cancer Research 12 (9), 2788-2794, 2006 | 150 | 2006 |
| Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance F Xin, M Li, C Balch, M Thomson, M Fan, Y Liu, SM Hammond, S Kim, ... Bioinformatics 25 (4), 430-434, 2009 | 128 | 2009 |
| CpG island shore methylation regulates caveolin-1 expression in breast cancer X Rao, J Evans, H Chae, J Pilrose, S Kim, P Yan, RL Huang, HC Lai, ... Oncogene 32 (38), 4519-4528, 2013 | 110 | 2013 |
| De novo identification of LTR retrotransposons in eukaryotic genomes M Rho, JH Choi, S Kim, M Lynch, H Tang BMC genomics 8 (1), 1-16, 2007 | 89 | 2007 |
| New anti-cancer strategies: epigenetic therapies and biomarkers C Balch, JS Montgomery, HI Paik, S Kim, TH Huang, KP Nephew Front Biosci 10 (1), 897-931, 2005 | 88 | 2005 |
| A fast multiple string pattern matching algorithm S Kim, Y Kim Proceedings of 17th AoM/IAoM Conference on Computer Science, 44-49, 1999 | 82 | 1999 |
| Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer JK Rhee, K Kim, H Chae, J Evans, P Yan, BT Zhang, J Gray, P Spellman, ... Nucleic acids research 41 (18), 8464-8474, 2013 | 68 | 2013 |
| Hybrid approach of relation network and localized graph convolutional filtering for breast cancer subtype classification S Rhee, S Seo, S Kim IJCAI 2018, arXiv preprint arXiv:1711.05859, 2017 | 55 | 2017 |
| Genome comparisons based on profiles of metabolic pathways L Liao, S Kim, JF Tomb Proceedings of the 6th International Conference on Knowledge-Based …, 2002 | 55 | 2002 |
| Recurrent fusion transcripts detected by whole‐transcriptome sequencing of 120 primary breast cancer samples J Kim, S Kim, S Ko, Y In, HG Moon, SK Ahn, MK Kim, M Lee, JH Hwang, ... Genes, Chromosomes and Cancer 54 (11), 681-691, 2015 | 50 | 2015 |
| Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing JH Choi, Y Li, J Guo, L Pei, TA Rauch, RS Kramer, SL Macmil, GB Wiley, ... PLoS One 5 (9), e13020, 2010 | 44 | 2010 |
| BioVLAB-MMIA-NGS: microRNA–mRNA integrated analysis using high-throughput sequencing data H Chae, S Rhee, KP Nephew, S Kim Bioinformatics 31 (2), 265-267, 2015 | 42 | 2015 |
| A machine-learning approach to combined evidence validation of genome assemblies JH Choi, S Kim, H Tang, J Andrews, DG Gilbert, JK Colbourne Bioinformatics 24 (6), 744-750, 2008 | 41 | 2008 |
| AMASS: A structured pattern matching approach to shotgun sequence assembly S Kim, AM Segre Journal of Computational Biology 6 (2), 163-186, 1999 | 41 | 1999 |
| ModGen: Theorem proving by model generation S Kim, H Zhang AAAI, 162-167, 1994 | 41 | 1994 |
| DeepFam: deep learning based alignment-free method for protein family modeling and prediction S Seo, M Oh, Y Park, S Kim Bioinformatics 34 (13), i254-i262, 2018 | 39 | 2018 |
Kenneth P. NephewJerry W. and Peggy S. Throgmartin Chair in OncologyVerifierad e-postadress på indiana.edu
