Alessandro Coppe
Title
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Year
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis
G Sales, A Coppe, A Bisognin, M Biasiolo, S Bortoluzzi, C Romualdi
Nucleic acids research 38 (suppl_2), W352-W359, 2010
1732010
Novel definition files for human GeneChips based on GeneAnnot
F Ferrari, S Bortoluzzi, A Coppe, A Sirota, M Safran, M Shmoish, S Ferrari, ...
BMC bioinformatics 8 (1), 1-6, 2007
1422007
Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring
M Milan, A Coppe, R Reinhardt, LM Cancela, RB Leite, C Saavedra, ...
BMC genomics 12 (1), 1-18, 2011
1362011
MAGIA2: from miRNA and genes expression data integrative analysis to microRNA–transcription factor mixed regulatory circuits (2012 update)
A Bisognin, G Sales, A Coppe, S Bortoluzzi, C Romualdi
Nucleic acids research 40 (W1), W13-W21, 2012
1242012
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel
A Coppe, JM Pujolar, GE Maes, PF Larsen, MM Hansen, L Bernatchez, ...
BMC genomics 11 (1), 1-13, 2010
1142010
Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel
JM Pujolar, IAM Marino, M Milan, A Coppe, GE Maes, F Capoccioni, ...
BMC genomics 13 (1), 1-21, 2012
792012
Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon
M Vidotto, A Grapputo, E Boscari, F Barbisan, A Coppe, G Grandi, ...
BMC genomics 14 (1), 1-16, 2013
722013
Genome evolution in the cold: Antarctic icefish muscle transcriptome reveals selective duplications increasing mitochondrial function
A Coppe, C Agostini, IAM Marino, L Zane, L Bargelloni, S Bortoluzzi, ...
Genome biology and evolution 5 (1), 45-60, 2013
582013
Impact of host genes and strand selection on miRNA and miRNA* expression
M Biasiolo, G Sales, M Lionetti, L Agnelli, K Todoerti, A Bisognin, A Coppe, ...
PloS one 6 (8), e23854, 2011
572011
High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia
EI Andersson, T Tanahashi, N Sekiguchi, VR Gasparini, S Bortoluzzi, ...
Blood, The Journal of the American Society of Hematology 128 (20), 2465-2468, 2016
532016
REEF: searching REgionally Enriched Features in genomes
A Coppe, GA Danieli, S Bortoluzzi
BMC bioinformatics 7 (1), 1-7, 2006
462006
mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host-parasite interaction
RB Leite, M Milan, A Coppe, S Bortoluzzi, A dos Anjos, R Reinhardt, ...
Bmc Genomics 14 (1), 1-17, 2013
392013
A-MADMAN: annotation-based microarray data meta-analysis tool
A Bisognin, A Coppe, F Ferrari, D Risso, C Romualdi, S Bicciato, ...
BMC bioinformatics 10 (1), 1-11, 2009
392009
TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources
L Lenzi, F Facchin, F Piva, M Giulietti, MC Pelleri, F Frabetti, L Vitale, ...
BMC genomics 12 (1), 1-18, 2011
352011
Genomic expression during human myelopoiesis
F Ferrari, S Bortoluzzi, A Coppe, D Basso, S Bicciato, R Zini, C Gemelli, ...
BMC genomics 8 (1), 1-19, 2007
342007
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
S Bortoluzzi, A Coppe, A Bisognin, C Pizzi, GA Danieli
BMC bioinformatics 6 (1), 1-15, 2005
282005
Sequencing and characterization of striped venus transcriptome expand resources for clam fishery genetics
A Coppe, S Bortoluzzi, G Murari, IAM Marino, L Zane, C Papetti
Public Library of Science 7 (9), e44185, 2012
262012
Genomic landscape characterization of large granular lymphocyte leukemia with a systems genetics approach
A Coppe, EI Andersson, A Binatti, VR Gasparini, S Bortoluzzi, M Clemente, ...
Leukemia 31 (5), 1243-1246, 2017
222017
Small RNA sequencing uncovers new miRNAs and moRNAs differentially expressed in normal and primary myelofibrosis CD34+ cells
P Guglielmelli, A Bisognin, C Saccoman, C Mannarelli, A Coppe, ...
PloS one 10 (10), e0140445, 2015
182015
Somatic mutations activating Wiskott–Aldrich syndrome protein concomitant with RAS pathway mutations in juvenile myelomonocytic leukemia patients
A Coppe, L Nogara, MS Pizzuto, A Cani, S Cesaro, R Masetti, F Locatelli, ...
Human mutation 39 (4), 579-587, 2018
152018
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