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David L Gibbs
David L Gibbs
Senior Research Scientist at ISB
Verified email at systemsbiology.org
Title
Cited by
Cited by
Year
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
42862018
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
21052018
Integrative molecular characterization of malignant pleural mesothelioma
J Hmeljak, F Sanchez-Vega, KA Hoadley, J Shih, C Stewart, D Heiman, ...
Cancer discovery 8 (12), 1548-1565, 2018
4812018
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
3702020
Perspective on oncogenic processes at the end of the beginning of cancer genomics
L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ...
Cell 173 (2), 305-320. e10, 2018
3492018
Combining dependent P-values with an empirical adaptation of Brown’s method
W Poole, DL Gibbs, I Shmulevich, B Bernard, TA Knijnenburg
Bioinformatics 32 (17), i430-i436, 2016
1452016
Genomic and molecular characterization of preterm birth
TA Knijnenburg, JG Vockley, N Chambwe, DL Gibbs, C Humphries, ...
Proceedings of the National Academy of Sciences 116 (12), 5819-5827, 2019
582019
The ISB Cancer Genomics Cloud: a flexible cloud-based platform for cancer genomics research
SM Reynolds, M Miller, P Lee, K Leinonen, SM Paquette, Z Rodebaugh, ...
Cancer research 77 (21), e7-e10, 2017
542017
CRI iAtlas: an interactive portal for immuno-oncology research
JA Eddy, V Thorsson, AE Lamb, DL Gibbs, C Heimann, JX Yu, V Chung, ...
F1000Research 9, 2020
362020
Protein co-expression network analysis (ProCoNA)
DL Gibbs, A Baratt, RS Baric, Y Kawaoka, RD Smith, ES Orwoll, MG Katze, ...
Journal of clinical bioinformatics 3, 1-10, 2013
342013
A pan-cancer approach to predict responsiveness to immune checkpoint inhibitors by machine learning
M Polano, M Chierici, M Dal Bo, D Gentilini, F Di Cintio, L Baboci, ...
Cancers 11 (10), 1562, 2019
312019
Copy number variation analysis in 98 individuals with PHACE syndrome
DH Siegel, JTC Shieh, E Kwon, E Baselga, F Blei, M Cordisco, ...
Journal of Investigative Dermatology 133 (3), 677-684, 2013
312013
Multi-omic network signatures of disease
DL Gibbs, LE Gralinski, RS Baric, SK McWeeney
Frontiers in genetics 4, 69296, 2014
292014
A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma
B Aguilar, DL Gibbs, DJ Reiss, M McConnell, SA Danziger, A Dervan, ...
Gigascience 9 (7), giaa075, 2020
202020
ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells
SA Danziger, DL Gibbs, I Shmulevich, M McConnell, MWB Trotter, ...
PLoS One 14 (11), e0224693, 2019
192019
Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle
DL Gibbs, I Shmulevich
PLoS computational biology 13 (6), e1005591, 2017
162017
Flexibility of boolean network reservoir computers in approximating arbitrary recursive and non-recursive binary filters
M Echlin, B Aguilar, M Notarangelo, DL Gibbs, I Shmulevich
Entropy 20 (12), 954, 2018
112018
Robust classification of Immune Subtypes in Cancer
DL Gibbs
bioRxiv, 2020.01. 17.910950, 2020
102020
Apposition of fibroblasts with metaplastic gastric cells promotes dysplastic transition
SH Lee, EWC Panta, D Gibbs, Y Won, J Min, C Zhang, JT Roland, ...
Gastroenterology 165 (2), 374-390, 2023
92023
Patient-specific cell communication networks associate with disease progression in cancer
DL Gibbs, B Aguilar, AV Ratushny
Frontiers in Genetics 12, 667382, 2021
62021
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Articles 1–20