| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018 | 6216 | 2018 |
| deepTools2: a next generation web server for deep-sequencing data analysis F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic acids research 44 (Web Server issue), W160, 2016 | 5874 | 2016 |
| deepTools: a flexible platform for exploring deep-sequencing data F Ramírez, F Dündar, S Diehl, BA Grüning, T Manke Nucleic acids research 42 (W1), W187-W191, 2014 | 2740 | 2014 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1010 | 2018 |
| Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations D Schubert, C Bode, R Kenefeck, TZ Hou, JB Wing, A Kennedy, ... Nature medicine 20 (12), 1410-1416, 2014 | 887 | 2014 |
| High-resolution TADs reveal DNA sequences underlying genome organization in flies F Ramírez, V Bhardwaj, L Arrigoni, KC Lam, BA Grüning, J Villaveces, ... Nature communications 9 (1), 189, 2018 | 749 | 2018 |
| Small-molecule conversion of toxic oligomers to nontoxic β-sheet–rich amyloid fibrils J Bieschke, M Herbst, T Wiglenda, RP Friedrich, A Boeddrich, F Schiele, ... Nature Chemical Biology 8 (1), 93-101, 2011 | 491 | 2011 |
| BioContainers: an open-source and community-driven framework for software standardization F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics 33 (16), 2580-2582, 2017 | 414 | 2017 |
| Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease R Gilsbach, S Preissl, BA Grüning, T Schnick, L Burger, V Benes, A Würch, ... Nature communications 5 (1), 5288, 2014 | 327 | 2014 |
| pyGenomeTracks: reproducible plots for multivariate genomic datasets L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj, R Backofen, B Grüning, ... Bioinformatics 37 (3), 422-423, 2021 | 297 | 2021 |
| NCBI BLAST+ integrated into Galaxy PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo Gigascience 4 (1), s13742-015-0080-7, 2015 | 244 | 2015 |
| Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization J Wolff, L Rabbani, R Gilsbach, G Richard, T Manke, R Backofen, ... Nucleic acids research 48 (W1), W177-W184, 2020 | 232 | 2020 |
| Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo R Gilsbach, M Schwaderer, S Preissl, BA Grüning, D Kranzhöfer, ... Nature communications 9 (1), 391, 2018 | 224 | 2018 |
| Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization J Wolff, V Bhardwaj, S Nothjunge, G Richard, G Renschler, R Gilsbach, ... Nucleic acids research 46 (W1), W11-W16, 2018 | 197 | 2018 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 190 | 2018 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 179 | 2016 |
| Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology PJA Cock, BA Grüning, K Paszkiewicz, L Pritchard PeerJ 1, e167, 2013 | 165 | 2013 |
| Strategies for analyzing bisulfite sequencing data K Wreczycka, A Gosdschan, D Yusuf, B Grüning, Y Assenov, A Akalin Journal of biotechnology 261, 105-115, 2017 | 159 | 2017 |
| SuperScent—a database of flavors and scents M Dunkel, U Schmidt, S Struck, L Berger, B Gruening, J Hossbach, ... Nucleic acids research 37 (suppl_1), D291-D294, 2009 | 153 | 2009 |
| StreptomeDB: a resource for natural compounds isolated from Streptomyces species X Lucas, C Senger, A Erxleben, BA Grüning, K Döring, J Mosch, ... Nucleic acids research 41 (D1), D1130-D1136, 2012 | 151 | 2012 |
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
