De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ... Science 373 (6555), 655-662, 2021 | 311 | 2021 |
MaizeGDB 2018: the maize multi-genome genetics and genomics database JL Portwood, MR Woodhouse, EK Cannon, JM Gardiner, LC Harper, ... Nucleic acids research 47 (D1), D1146-D1154, 2019 | 264 | 2019 |
An improved pig reference genome sequence to enable pig genetics and genomics research A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ... Gigascience 9 (6), giaa051, 2020 | 215 | 2020 |
Gapless assembly of maize chromosomes using long-read technologies J Liu, AS Seetharam, K Chougule, S Ou, KW Swentowsky, JI Gent, ... Genome Biology 21, 1-17, 2020 | 100 | 2020 |
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations N Manchanda, JL Portwood, MR Woodhouse, AS Seetharam, ... BMC genomics 21, 1-9, 2020 | 62 | 2020 |
Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data H Beiki, H Liu, J Huang, N Manchanda, D Nonneman, TPL Smith, ... BMC genomics 20, 1-19, 2019 | 60 | 2019 |
Effect of sequence depth and length in long-read assembly of the maize inbred NC358 S Ou, J Liu, KM Chougule, A Fungtammasan, AS Seetharam, JC Stein, ... Nature communications 11 (1), 2288, 2020 | 56 | 2020 |
Differences in activity and stability drive transposable element variation in tropical and temperate maize S Ou, T Collins, Y Qiu, AS Seetharam, CC Menard, N Manchanda, JI Gent, ... bioRxiv, 2022.10. 09.511471, 2022 | 10 | 2022 |
An improved pig reference genome sequence to enable pig genetics and genomics research. Gigascience 9: giaa051 A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ... | 8 | 2020 |
Evolution and adaptation in the maize genome N Manchanda, SJ Snodgrass, J Ross-Ibarra, MB Hufford The Maize Genome, 319-332, 2018 | 7 | 2018 |
Sequencing, assembly, and annotation of maize B104: a maize transformation resource N Manchanda, CM Andorf, L Ye, K Wimalanathan, S Rounsley, K Wang, ... Meeting Abstract, 92, 2016 | 4 | 2016 |
Differences in Transposable Element Activity Drive Genome Size Variability between Tropical and Temperate Maize S Ou, Y Qiu, AS Seetharam, N Manchanda, JI Gent, SN Anderson, ... Plant and Animal Genome XXIX Conference (January 8-12, 2022), 2022 | | 2022 |
Characterization of assemblies and annotations and comparative genomics of maize inbred lines B73 and B104 N Manchanda Iowa State University, 2022 | | 2022 |
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes O Shujun, L Jianing, G Tingting, O Andrew, Q Yingjie, T Silas, W Sharon, ... | | 2021 |
Sequence, Assembly and Annotation of Maize Inbred Line B104: A Maize Transformation Resource N Manchanda, CM Andorf, N Lauter, I Braun, M Woodhouse, K Wang, ... Plant and Animal Genome XXVII Conference (January 12-16, 2019), 0 | | |
Gene Copy Number Variation in the Maize Pan-Genome M Woodhouse, E Cannon, RK Dawe, MB Hufford, D Ware, AS Seetharam, ... Plant and Animal Genome XXVII Conference (January 12-16, 2019), 0 | | |