|Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities|
PD Schloss, SL Westcott, T Ryabin, JR Hall, M Hartmann, EB Hollister, ...
Appl. Environ. Microbiol. 75 (23), 7537-7541, 2009
|Towards a unified paradigm for sequence‐based identification of fungi|
U Kõljalg, RH Nilsson, K Abarenkov, L Tedersoo, AFS Taylor, M Bahram, ...
Molecular ecology 22 (21), 5271-5277, 2013
|Early life antibiotic‐driven changes in microbiota enhance susceptibility to allergic asthma|
SL Russell, MJ Gold, M Hartmann, BP Willing, L Thorson, M Wlodarska, ...
EMBO reports 13 (5), 440-447, 2012
|Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data|
J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ...
Methods in ecology and evolution 4 (10), 914-919, 2013
|Distinct soil microbial diversity under long-term organic and conventional farming|
M Hartmann, B Frey, J Mayer, P Mäder, F Widmer
The ISME journal 9 (5), 1177-1194, 2015
|Microbes as engines of ecosystem function: when does community structure enhance predictions of ecosystem processes?|
EB Graham, JE Knelman, A Schindlbacher, S Siciliano, M Breulmann, ...
Frontiers in microbiology 7, 214, 2016
|metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data|
J Bengtsson‐Palme, M Hartmann, KM Eriksson, C Pal, K Thorell, ...
Molecular Ecology Resources 15 (6), 1403-1414, 2015
|Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests|
M Hartmann, CG Howes, D VanInsberghe, H Yu, D Bachar, R Christen, ...
The ISME journal 6 (12), 2199-2218, 2012
|An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology|
RH Nilsson, V Veldre, M Hartmann, M Unterseher, A Amend, J Bergsten, ...
fungal ecology 3 (4), 284-287, 2010
|Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices|
M Hartmann, F Widmer
Appl. Environ. Microbiol. 72 (12), 7804-7812, 2006
|Long‐term experimental manipulation of climate alters the ectomycorrhizal community of Betula nana in Arctic tundra|
JR Deslippe, M Hartmann, WW Mohn, SW Simard
Global change biology 17 (4), 1625-1636, 2011
|Resistance and resilience of the forest soil microbiome to logging-associated compaction|
M Hartmann, PA Niklaus, S Zimmermann, S Schmutz, J Kremer, ...
The ISME journal 8 (1), 226-244, 2014
|Networking in the plant microbiome|
MGA van der Heijden, M Hartmann
PLoS Biology 14 (2), 2016
|Long-term warming alters the composition of Arctic soil microbial communities|
JR Deslippe, M Hartmann, SW Simard, WW Mohn
FEMS microbiology ecology 82 (2), 303-315, 2012
|Community structures and substrate utilization of bacteria in soils from organic and conventional farming systems of the DOK long-term field experiment|
F Widmer, F Rasche, M Hartmann, A Fliessbach
Applied Soil Ecology 33 (3), 294-307, 2006
|A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts|
RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ...
Microbes and environments, ME14121, 2015
|Semi-automated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches|
M Hartmann, B Frey, R Kölliker, F Widmer
Journal of Microbiological Methods 61 (3), 349-360, 2005
|Bacterial, archaeal and eukaryal community structures throughout soil horizons of harvested and naturally disturbed forest stands|
M Hartmann, S Lee, SJ Hallam, WW Mohn
Environmental Microbiology 11 (12), 3045-3062, 2009
|Improving ITS sequence data for identification of plant pathogenic fungi|
RH Nilsson, KD Hyde, J Pawłowska, M Ryberg, L Tedersoo, AB Aas, ...
Fungal Diversity 67, 11-19, 2014
|Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences|
RH Nilsson, L Tedersoo, K Abarenkov, M Ryberg, E Kristiansson, ...
MycoKeys 4, 37, 2012