John D. Chodera

Cited by

	All	Since 2016
Citations	12467	7775
h-index	48	40
i10-index	85	77

2200

1100

550

1650

20072008200920102011201220132014201520162017201820192020202177 179 285 383 491 613 730 880 947 1061 1128 1518 1524 2113 424

Co-authors

David MobleyProfessor, University of California, IrvineVerified email at uci.edu
Vijay PandeProfessor of Chemistry, Stanford UniversityVerified email at stanford.edu
Ken A. DillDirector of Laufer Center, Stony Brook UniversityVerified email at laufercenter.org
Michael R. ShirtsAssociate Professor of Chemical and Biological Engineering, University of Colorado BoulderVerified email at colorado.edu
Noe FrankFU Berlin, GermanyVerified email at fu-berlin.de
Jan-Hendrik PrinzMemorial Sloan Kettering Cancer CenterVerified email at choderalab.org
Kyle A. BeauchampBiophysics Program, Stanford UniversityVerified email at stanford.edu
A. S. RustenburgWeill Cornell Graduate SchoolVerified email at med.cornell.edu
Lee-Ping WangDepartment of Chemistry, UC DavisVerified email at ucdavis.edu
Carlos Jose BustamanteUniversity of California, BerkeleyVerified email at alice.berkeley.edu
Jay PonderDepartment of Chemistry, Washington UniversityVerified email at dasher.wustl.edu
Pengyu RenDepartment of Biomedical Engineering, The University of Texas at AustinVerified email at mail.utexas.edu
David MinhIllinois Institute of TechnologyVerified email at iit.edu
Bettina G. KellerProfessor of Theoretical Chemistry, Freie Universität BerlinVerified email at fu-berlin.de
Gavin E. CrooksXVerified email at threeplusone.com
S. Banu OzkanProfessor of Physics, Arizona State UniversityVerified email at asu.edu
Chaok SeokSeoul National UniversityVerified email at snu.ac.kr
Imran S HaqueRecursion PharmaceuticalsVerified email at cs.stanford.edu
Chuanjie WuSenior Principal Scientist for Force Field Development, Schrodinger, Inc.Verified email at schrodinger.com
Michael J. SchniedersAssociate Professor of Biomedical Engineering and Biochemistry, The University of IowaVerified email at uiowa.edu

John D. Chodera

Memorial Sloan-Kettering Cancer Center

Verified email at mskcc.org - Homepage

Drug Discovery Statistical Mechanics Computational Biophysics Biophysics Statistical Inference


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Statistically optimal analysis of samples from multiple equilibrium states MR Shirts, JD Chodera The Journal of chemical physics 129, 124105, 2008	1145	2008
Current status of the AMOEBA polarizable force field JW Ponder, C Wu, P Ren, VS Pande, JD Chodera, MJ Schnieders, ... The Journal of Physical Chemistry B 114 (8), 2549-2564, 2010	1019	2010
Markov models of molecular kinetics: Generation and validation JH Prinz, H Wu, M Sarich, B Keller, M Senne, M Held, JD Chodera, ... The Journal of chemical physics 134, 174105, 2011	822	2011
Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics JD Chodera, N Singhal, VS Pande, KA Dill, WC Swope The Journal of chemical physics 126, 155101, 2007	631	2007
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics P Eastman, J Swails, JD Chodera, RT McGibbon, Y Zhao, KA Beauchamp, ... PLoS computational biology 13 (7), e1005659, 2017	505	2017
OpenMM 4: a reusable, extensible, hardware independent library for high performance molecular simulation P Eastman, MS Friedrichs, JD Chodera, RJ Radmer, CM Bruns, JP Ku, ... Journal of chemical theory and computation 9 (1), 461-469, 2013	504	2013
Markov state models of biomolecular conformational dynamics JD Chodera, F Noé Current opinion in structural biology 25, 135-144, 2014	460	2014
Alchemical free energy methods for drug discovery: progress and challenges JD Chodera, DL Mobley, MR Shirts, RW Dixon, K Branson, VS Pande Current Opinion in Structural Biology, 2011	438	2011
Use of the weighted histogram analysis method for the analysis of simulated and parallel tempering simulations JD Chodera, WC Swope, JW Pitera, C Seok, KA Dill Journal of Chemical Theory and Computation 3 (1), 26-41, 2007	438	2007
Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design JD Chodera, DL Mobley Annual review of biophysics 42, 121-142, 2013	361	2013
The protein folding problem: when will it be solved? KA Dill, SB Ozkan, TR Weikl, JD Chodera, VA Voelz Current opinion in structural biology 17 (3), 342-346, 2007	302	2007
Predicting small-molecule solvation free energies: an informal blind test for computational chemistry A Nicholls, DL Mobley, JP Guthrie, JD Chodera, CI Bayly, MD Cooper, ... Journal of medicinal chemistry 51 (4), 769-779, 2008	280	2008
Predicting absolute ligand binding free energies to a simple model site DL Mobley, AP Graves, JD Chodera, AC McReynolds, BK Shoichet, ... Journal of molecular biology 371 (4), 1118-1134, 2007	277	2007
Comparison of Charge Models for Fixed-Charge Force Fields: Small Molecule Hydration Free Energies in Explicit Solvent DL Mobley, E Dumont, JD Chodera, KA Dill The journal of physical chemistry. B 115 (5), 1329-1332, 2011	266*	2011
Systematic improvement of a classical molecular model of water LP Wang, T Head-Gordon, JW Ponder, P Ren, JD Chodera, PK Eastman, ... The Journal of Physical Chemistry B 117 (34), 9956-9972, 2013	263	2013
Hypoxia induces production of L-2-hydroxyglutarate AM Intlekofer, RG Dematteo, S Venneti, LWS Finley, C Lu, AR Judkins, ... Cell metabolism 22 (2), 304-311, 2015	261	2015
On the use of orientational restraints and symmetry corrections in alchemical free energy calculations DL Mobley, JD Chodera, KA Dill The Journal of chemical physics 125, 084902, 2006	254	2006
Long-time protein folding dynamics from short-time molecular dynamics simulations JD Chodera, WC Swope, JW Pitera, KA Dill Multiscale Modeling and Simulation 5 (4), 1214, 2006	228	2006
The ribosome modulates nascent protein folding CM Kaiser, DH Goldman, JD Chodera, I Tinoco, C Bustamante Science 334 (6063), 1723-1727, 2011	222	2011
Alchemical free energy calculations: Ready for prime time? MR Shirts, DL Mobley, JD Chodera Annual Reports in Computational Chemistry 3, 41-59, 2007	214	2007

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Upload PDF

Follow this author

Cited by

Co-authors