Sofie Salama
Sofie Salama
Research Scientist, Dept. Biomolecular Engineering, UC Santa Cruz Genomics Institute, HHMI
Verified email at ucsc.edu
Title
Cited by
Cited by
Year
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113-1120, 2013
3995*2013
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 155 (2), 462-477, 2013
32252013
Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas
Cancer Genome Atlas Research Network
New England Journal of Medicine 372 (26), 2481-2498, 2015
17882015
Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E
DC Fingar, S Salama, C Tsou, ED Harlow, J Blenis
Genes & development 16 (12), 1472-1487, 2002
11872002
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ...
Cell 164 (3), 550-563, 2016
11822016
An RNA gene expressed during cortical development evolved rapidly in humans
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167-172, 2006
9962006
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ...
Nature 441 (7089), 87-90, 2006
5262006
Forces shaping the fastest evolving regions in the human genome
KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ...
PLoS Genet 2 (10), e168, 2006
4572006
Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT.
DE Waturangi, YA Bunardi, S Magdalena, S Beyhan, K Bilecen, ...
Research Journal of Microbiology 6 (12), 388-402, 2007
4152007
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
T Wang, J Zeng, CB Lowe, RG Sellers, SR Salama, M Yang, SM Burgess, ...
Proceedings of the National Academy of Sciences 104 (47), 18613-18618, 2007
3382007
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ...
Nature methods 7 (12), 995-1001, 2010
3362010
Comprehensive molecular characterization of pheochromocytoma and paraganglioma
L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ...
Cancer cell 31 (2), 181-193, 2017
3112017
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ...
Nature 516 (7530), 242-245, 2014
3102014
Human genome ultraconserved elements are ultraselected
S Katzman, AD Kern, G Bejerano, G Fewell, L Fulton, RK Wilson, ...
Science 317 (5840), 915-915, 2007
2632007
Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains
M Askenazi, EM Driggers, DA Holtzman, TC Norman, S Iverson, ...
Nature biotechnology 21 (2), 150-156, 2003
2542003
Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis
IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ...
Cell 173 (6), 1356-1369. e22, 2018
2072018
Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR
S Beyhan, K Bilecen, SR Salama, C Casper-Lindley, FH Yildiz
Journal of bacteriology 189 (2), 388-402, 2007
1702007
Establishing cerebral organoids as models of human-specific brain evolution
AA Pollen, A Bhaduri, MG Andrews, TJ Nowakowski, OS Meyerson, ...
Cell 176 (4), 743-756. e17, 2019
1682019
G1 cyclin degradation: the PEST motif of yeast Cln2 is necessary, but not sufficient, for rapid protein turnover.
SR Salama, KB Hendricks, J Thorner
Molecular and cellular biology 14 (12), 7953-7966, 1994
1421994
Combinatorial roles for pRB, p107, and p130 in E2F-mediated cell cycle control
M Classon, S Salama, C Gorka, R Mulloy, P Braun, E Harlow
Proceedings of the National Academy of Sciences 97 (20), 10820-10825, 2000
1372000
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Articles 1–20