Sofie Salama
Sofie Salama
Acting Professor of MCD Bio; Faculty Dir. of Diversity UCSC Genomics Inst.
Verified email at
Cited by
Cited by
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113-1120, 2013
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
cell 155 (2), 462-477, 2013
Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas
Cancer Genome Atlas Research Network
New England Journal of Medicine 372 (26), 2481-2498, 2015
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ...
Cell 164 (3), 550-563, 2016
Mammalian cell size is controlled by mTOR and its downstream targets S6K1 and 4EBP1/eIF4E
DC Fingar, S Salama, C Tsou, ED Harlow, J Blenis
Genes & development 16 (12), 1472-1487, 2002
An RNA gene expressed during cortical development evolved rapidly in humans
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167-172, 2006
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ...
Nature 441 (7089), 87-90, 2006
Comprehensive molecular characterization of pheochromocytoma and paraganglioma
L Fishbein, I Leshchiner, V Walter, L Danilova, AG Robertson, ...
Cancer cell 31 (2), 181-193, 2017
Forces shaping the fastest evolving regions in the human genome
KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ...
PLoS genetics 2 (10), e168, 2006
Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT.
DE Waturangi, YA Bunardi, S Magdalena, S Beyhan, K Bilecen, ...
Research Journal of Microbiology 6 (12), 388-402, 2007
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
T Wang, J Zeng, CB Lowe, RG Sellers, SR Salama, M Yang, SM Burgess, ...
Proceedings of the National Academy of Sciences 104 (47), 18613-18618, 2007
An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
FMJ Jacobs, D Greenberg, N Nguyen, M Haeussler, AD Ewing, ...
Nature 516 (7530), 242-245, 2014
Human-specific NOTCH2NL genes affect notch signaling and cortical neurogenesis
IT Fiddes, GA Lodewijk, M Mooring, CM Bosworth, AD Ewing, ...
Cell 173 (6), 1356-1369. e22, 2018
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ...
Nature methods 7 (12), 995-1001, 2010
Establishing cerebral organoids as models of human-specific brain evolution
AA Pollen, A Bhaduri, MG Andrews, TJ Nowakowski, OS Meyerson, ...
Cell 176 (4), 743-756. e17, 2019
Human genome ultraconserved elements are ultraselected
S Katzman, AD Kern, G Bejerano, G Fewell, L Fulton, RK Wilson, ...
Science 317 (5840), 915-915, 2007
Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains
M Askenazi, EM Driggers, DA Holtzman, TC Norman, S Iverson, ...
Nature biotechnology 21 (2), 150-156, 2003
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
Regulation of Rugosity and Biofilm Formation in Vibrio cholerae: Comparison of VpsT and VpsR Regulons and Epistasis Analysis of vpsT, vpsR, and hapR
S Beyhan, K Bilecen, SR Salama, C Casper-Lindley, FH Yildiz
Journal of bacteriology 189 (2), 388-402, 2007
G1 cyclin degradation: the PEST motif of yeast Cln2 is necessary, but not sufficient, for rapid protein turnover
SR Salama, KB Hendricks, J Thorner
Molecular and Cellular Biology 14 (12), 7953-7966, 1994
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