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John D. Storey
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Statistical significance for genomewide studies
JD Storey, R Tibshirani
Proceedings of the National Academy of Sciences 100 (16), 9440-9445, 2003
101312003
A direct approach to false discovery rates
JD Storey
Journal of the Royal Statistical Society: Series B (Statistical Methodology …, 2002
59702002
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
JT Leek, WE Johnson, HS Parker, AE Jaffe, JD Storey
Bioinformatics 28 (6), 882-883, 2012
31612012
The positive false discovery rate: a Bayesian interpretation and the q-value
JD Storey
The annals of statistics 31 (6), 2013-2035, 2003
24022003
Empirical Bayes analysis of a microarray experiment
B Efron, R Tibshirani, JD Storey, V Tusher
Journal of the American statistical association 96 (456), 1151-1160, 2001
21732001
Capturing heterogeneity in gene expression studies by surrogate variable analysis
JT Leek, JD Storey
PLoS Genetics 3 (9), e161, 2007
17972007
A network-based analysis of systemic inflammation in humans
SE Calvano, W Xiao, DR Richards, RM Felciano, HV Baker, RJ Cho, ...
Nature 437 (7061), 1032-1037, 2005
16022005
Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach
JD Storey, JE Taylor, D Siegmund
Journal of the Royal Statistical Society: Series B (Statistical Methodology …, 2004
15522004
Mapping the genetic architecture of gene expression in human liver
EE Schadt, C Molony, E Chudin, K Hao, X Yang, PY Lum, A Kasarskis, ...
PLoS biology 6 (5), e107, 2008
11372008
A genomic storm in critically injured humans
W Xiao, MN Mindrinos, J Seok, J Cuschieri, AG Cuenca, H Gao, ...
Journal of Experimental Medicine 208 (13), 2581-2590, 2011
10842011
Precision and functional specificity in mRNA decay
Y Wang, CL Liu, JD Storey, RJ Tibshirani, D Herschlag, PO Brown
Proceedings of the National Academy of Sciences 99 (9), 5860-5865, 2002
8502002
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
Y Arava, Y Wang, JD Storey, CL Liu, PO Brown, D Herschlag
Proceedings of the National Academy of Sciences 100 (7), 3889-3894, 2003
7592003
Significance analysis of time course microarray experiments
JD Storey, W Xiao, JT Leek, RG Tompkins, RW Davis
Proceedings of the National Academy of Sciences 102 (36), 12837-12842, 2005
7002005
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
L Käll, JD Storey, MJ MacCoss, WS Noble
Journal of proteome research 7 (01), 29-34, 2008
6872008
qvalue: Q-value estimation for false discovery rate control
JD Storey, AJ Bass, A Dabney, D Robinson
R package version 2 (0), 10.18129, 2015
4992015
A general framework for multiple testing dependence
JT Leek, JD Storey
Proceedings of the National Academy of Sciences 105 (48), 18718-18723, 2008
4082008
Genetic interactions between polymorphisms that affect gene expression in yeast
RB Brem, JD Storey, J Whittle, L Kruglyak
Nature 436 (7051), 701-703, 2005
3692005
sva: Surrogate variable analysis
JT Leek, WE Johnson, HS Parker, EJ Fertig, AE Jaffe, JD Storey, Y Zhang, ...
R package version 3 (0), 882-883, 2019
3622019
Gene-expression variation within and among human populations
JD Storey, J Madeoy, JL Strout, M Wurfel, J Ronald, JM Akey
The American Journal of Human Genetics 80 (3), 502-509, 2007
3432007
Posterior error probabilities and false discovery rates: two sides of the same coin
L Käll, JD Storey, MJ MacCoss, WS Noble
Journal of proteome research 7 (01), 40-44, 2008
3322008
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