| Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication M Carneiro, CJ Rubin, F Di Palma, FW Albert, J Alföldi, AM Barrio, ... Science 345 (6200), 1074-1079, 2014 | 267 | 2014 |
| Reference-free population genomics from next-generation transcriptome data and the vertebrate–invertebrate gap P Gayral, J Melo-Ferreira, S Glemin, N Bierne, M Carneiro, B Nabholz, ... PLoS Genet 9 (4), e1003457, 2013 | 149 | 2013 |
| Genetic basis for red coloration in birds RJ Lopes, JD Johnson, MB Toomey, MS Ferreira, PM Araujo, ... Current Biology 26 (11), 1427-1434, 2016 | 130 | 2016 |
| The genetic structure of domestic rabbits M Carneiro, S Afonso, A Geraldes, H Garreau, G Bolet, S Boucher, ... Molecular Biology and Evolution 28 (6), 1801-1816, 2011 | 108 | 2011 |
| Gene expression across mammalian organ development M Cardoso-Moreira, J Halbert, D Valloton, B Velten, C Chen, Y Shao, ... Nature 571 (7766), 505-509, 2019 | 107 | 2019 |
| Recombination and speciation: loci near centromeres are more differentiated than loci near telomeres between subspecies of the European rabbit (Oryctolagus cuniculus) M Carneiro, N Ferrand, MW Nachman Genetics 181 (2), 593-606, 2009 | 107 | 2009 |
| A comparison of brain gene expression levels in domesticated and wild animals FW Albert, M Somel, M Carneiro, A Aximu-Petri, M Halbwax, O Thalmann, ... PLoS Genet 8 (9), e1002962, 2012 | 105 | 2012 |
| Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) Revealed by Species-Tree Inference and Coalescent Simulations J Melo-Ferreira, P Boursot, M Carneiro, PJ Esteves, L Farelo, PC Alves Systematic Biology 61 (3), 367-381, 2012 | 105 | 2012 |
| The genomic architecture of population divergence between subspecies of the European rabbit M Carneiro, FW Albert, S Afonso, RJ Pereira, H Burbano, R Campos, ... PLoS Genet 10 (8), e1003519, 2014 | 87 | 2014 |
| Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome M Carneiro, FW Albert, J Melo-Ferreira, N Galtier, P Gayral, ... Molecular Biology and Evolution 29 (7), 1837-1849, 2012 | 77 | 2012 |
| SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES M Carneiro, JA Blanco‐Aguiar, R Villafuerte, N Ferrand, MW Nachman Evolution: International Journal of Organic Evolution 64 (12), 3443-3460, 2010 | 77 | 2010 |
| Identifying Loci Under Selection Against Gene Flow in Isolation with Migration Models VMC Sousa, M Carneiro, N Ferrand, J Hey Genetics 194, 211-233, 2013 | 58 | 2013 |
| High-density lipoprotein receptor SCARB1 is required for carotenoid coloration in birds MB Toomey, RJ Lopes, PM Araújo, JD Johnson, MA Gazda, S Afonso, ... Proceedings of the National Academy of Sciences 114 (20), 5219-5224, 2017 | 52 | 2017 |
| Reduced introgression of the Y chromosome between subspecies of the European rabbit (Oryctolagus cuniculus) in the Iberian Peninsula A Geraldes, M Carneiro, M Delibes‐Mateos, R Villafuerte, MW Nachman, ... Molecular Ecology 17 (20), 4489-4499, 2008 | 49 | 2008 |
| Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard P Andrade, C Pinho, GP i de Lanuza, S Afonso, J Brejcha, CJ Rubin, ... Proceedings of the National Academy of Sciences 116 (12), 5633-5642, 2019 | 47 | 2019 |
| Detection of positive selection in the major capsid protein VP60 of the rabbit haemorrhagic disease virus (RHDV) PJ Esteves, J Abrantes, M Carneiro, A Müller, G Thompson, ... Virus research 137 (2), 253-256, 2008 | 47 | 2008 |
| Parallel adaptation of rabbit populations to myxoma virus JM Alves, M Carneiro, JY Cheng, AL de Matos, MM Rahman, L Loog, ... Science 363 (6433), 1319-1326, 2019 | 46 | 2019 |
| Transcriptome‐wide patterns of divergence during allopatric evolution RJ Pereira, FS Barreto, NT Pierce, M Carneiro, RS Burton Molecular Ecology 25 (7), 1478-1493, 2016 | 39 | 2016 |
| Diversity and evolutionary history of the MHC DQA gene in leporids AK Surridge, W Van der Loo, J Abrantes, M Carneiro, GM Hewitt, ... Immunogenetics 60 (9), 515-525, 2008 | 39 | 2008 |
| Elevated proportions of deleterious genetic variation in domestic animals and plants T Makino, CJ Rubin, M Carneiro, E Axelsson, L Andersson, MT Webster Genome Biology and Evolution 10 (1), 276-290, 2018 | 36 | 2018 |
