| Automated 3D structure composition for large RNAs M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ... Nucleic acids research 40 (14), e112, 2012 | 742 | 2012 |
| A Survey on Online Judge Systems and Their Applications S Wasik, M Antczak, A Laskowski, T Sternal ACM Computing Surveys 51 (1), 3:1-3:34, 2018 | 255 | 2018 |
| New functionality of RNAComposer: application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737–744, 2016 | 205 | 2016 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 195 | 2017 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 128 | 2020 |
| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 118 | 2018 |
| RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014 | 85 | 2014 |
| RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 76 | 2020 |
| Automated 3D RNA structure prediction using the RNAComposer method for riboswitches1 KJ Purzycka, M Popenda, M Szachniuk, M Antczak, P Lukasiak, ... Methods in enzymology 553, 3-34, 2015 | 59 | 2015 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 47 | 2018 |
| New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC Bioinformatics 16 (1), 276, 2015 | 38 | 2015 |
| RNAsolo: a repository of cleaned PDB-derived RNA 3D structures B Adamczyk, M Antczak, M Szachniuk Bioinformatics 38 (14), 3668-3670, 2022 | 33 | 2022 |
| RNA tertiary structure prediction using RNAComposer in CASP15 J Sarzynska, M Popenda, M Antczak, M Szachniuk Proteins: Structure, Function, and Bioinformatics 91 (12), 1790-1799, 2023 | 32 | 2023 |
| New prediction categories in CASP15 A Kryshtafovych, M Antczak, M Szachniuk, T Zok, RC Kretsch, R Rangan, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1550-1557, 2023 | 32 | 2023 |
| RNAlyzer—novel approach for quality analysis of RNA structural models P Lukasiak, M Antczak, T Ratajczak, JM Bujnicki, M Szachniuk, ... Nucleic Acids Research 41 (12), 5978-5990, 2013 | 31 | 2013 |
| RNAssess—a web server for quality assessment of RNA 3D structures P Lukasiak, M Antczak, T Ratajczak, M Szachniuk, M Popenda, ... Nucleic acids research 43 (W1), W502-506, 2015 | 28 | 2015 |
| SphereGrinder - reference structure-based tool for quality assessment of protein structural models P Lukasiak, M Antczak, T Ratajczak, J Blazewicz Proceedings of the 2015 IEEE International Conference on Bioinformatics and …, 2015 | 26 | 2015 |
| Optil.io: Cloud Based Platform For Solving Optimization Problems Using Crowdsourcing Approach S Wasik, M Antczak, J Badura, A Laskowski, T Sternal Proceedings of the 19th ACM Conference on Computer Supported Cooperative …, 2016 | 22 | 2016 |
| Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions F Carrascoza, M Antczak, Z Miao, E Westhof, M Szachniuk Rna 28 (2), 250-262, 2022 | 19 | 2022 |
| Entanglements of structure elements revealed in RNA 3D models M Popenda, T Zok, J Sarzynska, A Korpeta, RW Adamiak, M Antczak, ... Nucleic acids research 49 (17), 9625-9632, 2021 | 19 | 2021 |
Marta SzachniukProfessor; Institute of Bioorganic Chemistry PAS and Poznan University of TechnologyVerified email at cs.put.poznan.pl
