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Maciej Antczak
Maciej Antczak
Assistant Professor at Institute of Computing Science, Poznan University of Technology
Verified email at cs.put.poznan.pl - Homepage
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Cited by
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Year
Automated 3D structure composition for large RNAs
M Popenda, M Szachniuk, M Antczak, KJ Purzycka, P Lukasiak, N Bartol, ...
Nucleic acids research 40 (14), e112, 2012
5282012
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
1552017
A Survey on Online Judge Systems and Their Applications
S Wasik, M Antczak, A Laskowski, T Sternal
ACM Computing Surveys 51 (1), 3:1-3:34, 2018
1542018
New functionality of RNAComposer: application to shape the axis of miR160 precursor structure
M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ...
Acta Biochimica Polonica 63 (4), 737–744, 2016
1022016
RNApdbee 2.0: multifunctional tool for RNA structure annotation
T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ...
Nucleic acids research 46 (W1), W30-W35, 2018
662018
RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs
M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ...
Nucleic acids research 42 (W1), W368-W372, 2014
602014
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
RNA 26 (8), 982-995, 2020
522020
Automated 3D RNA structure prediction using the RNAComposer method for Riboswitches1
KJ Purzycka, M Popenda, M Szachniuk, M Antczak, P Lukasiak, ...
Methods in enzymology 553, 3-34, 2015
402015
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools
M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ...
Nucleic acids research 48 (2), 576-588, 2020
332020
New in silico approach to assessing RNA secondary structures with non-canonical base pairs
A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ...
BMC Bioinformatics 16 (1), 276, 2015
302015
RNAlyzer—novel approach for quality analysis of RNA structural models
P Lukasiak, M Antczak, T Ratajczak, JM Bujnicki, M Szachniuk, ...
Nucleic Acids Research 41 (12), 5978-5990, 2013
252013
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation
M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk
Bioinformatics 34 (8), 1304-1312, 2018
232018
RNAssess—a web server for quality assessment of RNA 3D structures
P Lukasiak, M Antczak, T Ratajczak, M Szachniuk, M Popenda, ...
Nucleic acids research 43 (W1), W502-506, 2015
232015
SphereGrinder - reference structure-based tool for quality assessment of protein structural models
P Lukasiak, M Antczak, T Ratajczak, J Blazewicz
Proceedings of the 2015 IEEE International Conference on Bioinformatics and …, 2015
222015
Optil.io: Cloud Based Platform For Solving Optimization Problems Using Crowdsourcing Approach
S Wasik, M Antczak, J Badura, A Laskowski, T Sternal
Proceedings of the 19th ACM Conference on Computer Supported Cooperative …, 2016
202016
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs
M Antczak, M Zablocki, T Zok, A Rybarczyk, J Blazewicz, M Szachniuk
Bioinformatics 35 (1), 152-155, 2019
112019
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures
M Antczak, T Zok, M Osowiecki, M Popenda, RW Adamiak, M Szachniuk
BMC bioinformatics 19 (1), 1-11, 2018
112018
Building the library of RNA 3D nucleotide conformations using the clustering approach
T Zok, M Antczak, M Riedel, D Nebel, T Villmann, P Lukasiak, J Blazewicz, ...
International Journal of Applied Mathematics and Computer Science 25 (3 …, 2015
92015
New models and algorithms for RNA pseudoknot order assignment
T Zok, J Badura, S Swat, K Figurski, M Popenda, M Antczak
International Journal of Applied Mathematics and Computer Science 30 (2 …, 2020
62020
Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions
F Carrascoza, M Antczak, Z Miao, E Westhof, M Szachniuk
RNA 28 (2), 250-262, 2022
52022
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