| Genome sequence of the Brown Norway rat yields insights into mammalian evolution RA Gibbs, L Pachter Nature 428 (6982), 493-521, 2004 | 2307 | 2004 |
| A guided tour of the Trans‐Proteomic Pipeline EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ... Proteomics 10 (6), 1150-1159, 2010 | 742 | 2010 |
| iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ... Molecular & cellular proteomics 10 (12), 2011 | 484 | 2011 |
| Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ... Cell 166 (3), 766-778, 2016 | 258 | 2016 |
| 组织与管理研究的实证方法 陈晓萍 | 249 | 2008 |
| Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics EW Deutsch, L Mendoza, D Shteynberg, J Slagel, Z Sun, RL Moritz PROTEOMICS–Clinical Applications 9 (7-8), 745-754, 2015 | 244 | 2015 |
| Combining results of multiple search engines in proteomics D Shteynberg, AI Nesvizhskii, RL Moritz, EW Deutsch Molecular & Cellular Proteomics 12 (9), 2383-2393, 2013 | 181 | 2013 |
| Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition BJ Tauro, RA Mathias, DW Greening, SK Gopal, H Ji, EA Kapp, ... Molecular & cellular proteomics 12 (8), 2148-2159, 2013 | 160 | 2013 |
| State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology-and disease-driven Human Proteome Project T Farrah, EW Deutsch, GS Omenn, Z Sun, JD Watts, T Yamamoto, ... Journal of proteome research 13 (1), 60-75, 2014 | 136 | 2014 |
| Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis J Malmström, H Lee, AI Nesvizhskii, D Shteynberg, S Mohanty, E Brunner, ... Journal of proteome research 5 (9), 2241-2249, 2006 | 101 | 2006 |
| MaRiMba: a software application for spectral library-based MRM transition list assembly CA Sherwood, A Eastham, LW Lee, A Peterson, JK Eng, D Shteynberg, ... Journal of proteome research 8 (10), 4396-4405, 2009 | 82 | 2009 |
| State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet EW Deutsch, Z Sun, D Campbell, U Kusebauch, CS Chu, L Mendoza, ... Journal of proteome research 14 (9), 3461-3473, 2015 | 66 | 2015 |
| Identification of rat genes by TWINSCAN gene prediction, RT–PCR, and direct sequencing JQ Wu, D Shteynberg, M Arumugam, RA Gibbs, MR Brent Genome Research 14 (4), 665-671, 2004 | 45 | 2004 |
| Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline A Keller, D Shteynberg Bioinformatics for Comparative Proteomics, 169-189, 2011 | 43 | 2011 |
| Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional … K Surmann, S Michalik, P Hildebrandt, P Gierok, M Depke, L Brinkmann, ... Frontiers in microbiology 5, 392, 2014 | 42 | 2014 |
| Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction RA Saleem, RS Rogers, AV Ratushny, DJ Dilworth, PT Shannon, ... Molecular & Cellular Proteomics 9 (9), 2076-2088, 2010 | 41 | 2010 |
| Trans‐Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets EW Deutsch, D Shteynberg, H Lam, Z Sun, JK Eng, C Carapito, ... Proteomics 10 (6), 1190-1195, 2010 | 41 | 2010 |
| Opening a SWATH window on posttranslational modifications: automated pursuit of modified peptides A Keller, SL Bader, U Kusebauch, D Shteynberg, L Hood, RL Moritz Molecular & Cellular Proteomics 15 (3), 1151-1163, 2016 | 39 | 2016 |
| Gene finding in the chicken genome E Eyras, A Reymond, R Castelo, JM Bye, F Camara, P Flicek, EJ Huckle, ... BMC bioinformatics 6 (1), 1-12, 2005 | 39 | 2005 |
| Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data-independent Acquisition Mass Spectrometry (MS) using SWATHProphet*[S] A Keller, SL Bader, D Shteynberg, L Hood, RL Moritz Molecular & Cellular Proteomics 14 (5), 1411-1418, 2015 | 33 | 2015 |
