David Shteynberg
TitleCited byYear
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, ...
Nature 428 (6982), 493-520, 2004
A guided tour of the Trans‐Proteomic Pipeline
EW Deutsch, L Mendoza, D Shteynberg, T Farrah, H Lam, N Tasman, ...
Proteomics 10 (6), 1150-1159, 2010
iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates
D Shteynberg, EW Deutsch, H Lam, JK Eng, Z Sun, N Tasman, ...
Molecular & cellular proteomics 10 (12), 2011
陈晓萍, 沈伟
Beijing da xue chu ban she, 2018
Human SRMAtlas: a resource of targeted assays to quantify the complete human proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ...
Cell 166 (3), 766-778, 2016
Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics
EW Deutsch, L Mendoza, D Shteynberg, J Slagel, Z Sun, RL Moritz
PROTEOMICS–Clinical Applications 9 (7-8), 745-754, 2015
Combining results of multiple search engines in proteomics
D Shteynberg, AI Nesvizhskii, RL Moritz, EW Deutsch
Molecular & Cellular Proteomics 12 (9), 2383-2393, 2013
Cooperative spectrum sharing in cognitive radio networks with multiple antennas
R Manna, RHY Louie, Y Li, B Vucetic
IEEE Transactions on Signal Processing 59 (11), 5509-5522, 2011
State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology-and disease-driven Human Proteome Project
T Farrah, EW Deutsch, GS Omenn, Z Sun, JD Watts, T Yamamoto, ...
Journal of proteome research 13 (1), 60-75, 2014
Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition
BJ Tauro, RA Mathias, DW Greening, SK Gopal, H Ji, EA Kapp, ...
Molecular & cellular proteomics 12 (8), 2148-2159, 2013
The state of the human proteome in 2012 as viewed through PeptideAtlas
T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ...
Journal of proteome research 12 (1), 162-171, 2013
Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis
J Malmström, H Lee, AI Nesvizhskii, D Shteynberg, S Mohanty, E Brunner, ...
Journal of proteome research 5 (9), 2241-2249, 2006
MaRiMba: a software application for spectral library-based MRM transition list assembly
CA Sherwood, A Eastham, LW Lee, A Peterson, JK Eng, D Shteynberg, ...
Journal of proteome research 8 (10), 4396-4405, 2009
State of the human proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet
EW Deutsch, Z Sun, D Campbell, U Kusebauch, CS Chu, L Mendoza, ...
Journal of proteome research 14 (9), 3461-3473, 2015
Identification of rat genes by TWINSCAN gene prediction, RT–PCR, and direct sequencing
JQ Wu, D Shteynberg, M Arumugam, RA Gibbs, MR Brent
Genome research 14 (4), 665-671, 2004
Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional …
K Surmann, S Michalik, P Hildebrandt, P Gierok, M Depke, L Brinkmann, ...
Frontiers in microbiology 5, 392, 2014
Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline
A Keller, D Shteynberg
Bioinformatics for Comparative Proteomics, 169-189, 2011
Trans‐Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets
EW Deutsch, D Shteynberg, H Lam, Z Sun, JK Eng, C Carapito, ...
Proteomics 10 (6), 1190-1195, 2010
Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction
RA Saleem, RS Rogers, AV Ratushny, DJ Dilworth, PT Shannon, ...
Molecular & Cellular Proteomics 9 (9), 2076-2088, 2010
Gene finding in the chicken genome
E Eyras, A Reymond, R Castelo, JM Bye, F Camara, P Flicek, EJ Huckle, ...
BMC bioinformatics 6 (1), 131, 2005
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