Luis Pedro Coelho
Title
Cited by
Cited by
Year
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 2015
10972015
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ...
Mol Biol Evol, msx148, 2017
5692017
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M G÷nen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
4602014
Structure and function of the global topsoil microbiome
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
3302018
Metagenomic species profiling using universal phylogenetic marker genes
S Sunagawa, DR Mende, G Zeller, F Izquierdo-Carrasco, SA Berger, ...
Nature methods 10 (12), 1196-1199, 2013
3302013
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature, 2016
3202016
Towards standards for human fecal sample processing in metagenomic studies.
PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ...
Nature biotechnology, 2017
2692017
Nuclear segmentation in microscope cell images: a hand-segmented dataset and comparison of algorithms
LP Coelho, A Shariff, RF Murphy
Biomedical Imaging: From Nano to Macro, 2009. ISBI'09. IEEE Internationalá…, 2009
1942009
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-na´ve Parkinson’s disease patients
JR Bedarf, F Hildebrand, LP Coelho, S Sunagawa, M Bahram, F Goeser, ...
Genome medicine 9 (1), 1-13, 2017
1902017
Host-cell sensors for Plasmodium activate innate immunity against liver-stage infection
P Liehl, V Zuzarte-LuÝs, J Chan, T Zillinger, F Baptista, D Carapau, ...
Nature medicine 20 (1), 47-53, 2014
1872014
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
1712014
Mahotas: Open source software for scriptable computer vision
LP Coelho
Journal of Open Research Software 1, e3, 2013
1572013
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
1522019
Recovery of gut microbiota of healthy adults following antibiotic exposure
A Palleja, KH Mikkelsen, SK Forslund, A Kashani, KH Allin, T Nielsen, ...
Nature microbiology 3 (11), 1255-1265, 2018
1322018
Automated image analysis for high-content screening and analysis
A Shariff, J Kangas, LP Coelho, S Quinn, RF Murphy
Journal of biomolecular screening 15 (7), 726-734, 2010
1182010
Selective maternal seeding and environment shape the human gut microbiome
K Korpela, PI Costea, LP Coelho, S Kandels-Lewis, G Willemsen, ...
Genome Research, gr. 233940.117, 2018
952018
MOCAT2: a metagenomic assembly, annotation and profiling framework
JR Kultima, LP Coelho, K Forslund, J Huerta-Cepas, SS Li, M Driessen, ...
Bioinformatics 32 (16), 2520-2523, 2016
872016
Similarity of the dog and human gut microbiomes in gene content and response to diet
LP Coelho, JR Kultima, PI Costea, C Fournier, Y Pan, ...
Microbiome 6 (1), 72, 2018
762018
Metagenomic insights into the human gut resistome and the forces that shape it
K Forslund, S Sunagawa, LP Coelho, P Bork
BioEssays 36 (3), 316-329, 2014
612014
metaSNV: A tool for metagenomic strain level analysis
PI Costea, R Munch, LP Coelho, L Paoli, S Sunagawa, P Bork
PloS one 12 (7), e0182392, 2017
552017
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Articles 1–20