Jason D. Lieb
Jason D. Lieb
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
117872012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
53212007
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
23792012
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
15892012
The DNA-encoded nucleosome organization of a eukaryotic genome
N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ...
Nature 458 (7236), 362-366, 2009
12362009
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
9512010
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
PG Giresi, J Kim, RM McDaniell, VR Iyer, JD Lieb
Genome research 17 (6), 877-885, 2007
8942007
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein–DNA association
JD Lieb, X Liu, D Botstein, PO Brown
Nature genetics 28 (4), 327-334, 2001
8552001
Unlocking the secrets of the genome
SE Celniker, LAL Dillon, MB Gerstein, KC Gunsalus, S Henikoff, ...
Nature 459 (7249), 927-930, 2009
8452009
Evidence for nucleosome depletion at active regulatory regions genome-wide
CK Lee, Y Shibata, B Rao, BD Strahl, JD Lieb
Nature genetics 36 (8), 900-905, 2004
8142004
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
MJ Buck, JD Lieb
Genomics 83 (3), 349-360, 2004
7722004
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
6572014
2004
JD Anderson, J Widom, U Venter, J Svaren, J Schmitz, A Schmid, W Horz, ...
586*1998
A map of open chromatin in human pancreatic islets
KJ Gaulton, T Nammo, L Pasquali, JM Simon, PG Giresi, MP Fogarty, ...
Nature genetics 42 (3), 255, 2010
5652010
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
L Song, Z Zhang, LL Grasfeder, AP Boyle, PG Giresi, BK Lee, ...
Genome research 21 (10), 1757-1767, 2011
5242011
Nucleosome dynamics define transcriptional enhancers
HH He, CA Meyer, H Shin, ST Bailey, G Wei, Q Wang, Y Zhang, K Xu, ...
Nature genetics 42 (4), 343, 2010
4862010
What are super-enhancers?
S Pott, JD Lieb
Nature genetics 47 (1), 8-12, 2015
4602015
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ...
Molecular cell 32 (6), 878-887, 2008
4532008
Integrating regulatory motif discovery and genome-wide expression analysis
EM Conlon, XS Liu, JD Lieb, JS Liu
Proceedings of the National Academy of Sciences 100 (6), 3339-3344, 2003
4192003
Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus
W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ...
PLoS Genet 6 (2), e1000841, 2010
3972010
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Artiklar 1–20