|Benchmarking sets for molecular docking|
N Huang, BK Shoichet, JJ Irwin
Journal of medicinal chemistry 49 (23), 6789-6801, 2006
|Nuclear m6A reader YTHDC1 regulates mRNA splicing|
W Xiao, S Adhikari, U Dahal, YS Chen, YJ Hao, BF Sun, HY Sun, A Li, ...
Molecular cell 61 (4), 507-519, 2016
|Determination of electrostatic parameters for a polarizable force field based on the classical Drude oscillator|
VM Anisimov, G Lamoureux, IV Vorobyov, N Huang, B Roux, ...
Journal of chemical theory and computation 1 (1), 153-168, 2005
|Automated docking screens: a feasibility study|
JJ Irwin, BK Shoichet, MM Mysinger, N Huang, F Colizzi, P Wassam, ...
Journal of medicinal chemistry 52 (18), 5712-5720, 2009
|5-methylcytosine promotes mRNA export—NSUN2 as the methyltransferase and ALYREF as an m 5 C reader|
X Yang, Y Yang, BF Sun, YS Chen, JW Xu, WY Lai, A Li, X Wang, ...
Cell research 27 (5), 606-625, 2017
|Molecular mechanics methods for predicting protein–ligand binding|
N Huang, C Kalyanaraman, K Bernacki, MP Jacobson
Physical Chemistry Chemical Physics 8 (44), 5166-5177, 2006
|Consideration of molecular weight during compound selection in virtual target-based database screening|
Y Pan, N Huang, S Cho, AD MacKerell
Journal of chemical information and computer sciences 43 (1), 267-272, 2003
|Physics-based scoring of protein− ligand complexes: Enrichment of known inhibitors in large-scale virtual screening|
N Huang, C Kalyanaraman, JJ Irwin, MP Jacobson
Journal of chemical information and modeling 46 (1), 243-253, 2006
|Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase|
N Huang, NK Banavali, AD MacKerell
Proceedings of the National Academy of Sciences 100 (1), 68-73, 2003
|Exploiting ordered waters in molecular docking|
N Huang, BK Shoichet
Journal of medicinal chemistry 51 (16), 4862-4865, 2008
|Molecular determinants of enterovirus 71 viral entry cleft around Gln-172 on VP1 protein interacts with variable region on scavenge receptor B 2|
P Chen, Z Song, Y Qi, X Feng, N Xu, Y Sun, X Wu, X Yao, Q Mao, X Li, ...
Journal of Biological Chemistry 287 (9), 6406-6420, 2012
|Structural basis for activation and inhibition of the secreted chlamydia protease CPAF|
Z Huang, Y Feng, D Chen, X Wu, S Huang, X Wang, X Xiao, W Li, ...
Cell host & microbe 4 (6), 529-542, 2008
|Identification of non-phosphate-containing small molecular weight inhibitors of the tyrosine kinase p56 Lck SH2 domain via in silico screening against the pY+ 3 binding site|
N Huang, A Nagarsekar, G Xia, J Hayashi, AD MacKerell
Journal of medicinal chemistry 47 (14), 3502-3511, 2004
|Physics-based methods for studying protein-ligand interactions|
N Huang, MP Jacobson
Current Opinion in Drug Discovery and Development 10 (3), 325, 2007
|A bacterial type III effector family uses the papain-like hydrolytic activity to arrest the host cell cycle|
Q Yao, J Cui, Y Zhu, G Wang, L Hu, C Long, R Cao, X Liu, N Huang, ...
Proceedings of the National Academy of Sciences 106 (10), 3716-3721, 2009
|Identification of novel inhibitors of BCR-ABL tyrosine kinase via virtual screening|
H Peng, N Huang, J Qi, P Xie, C Xu, J Wang, C Yang
Bioorganic & medicinal chemistry letters 13 (21), 3693-3699, 2003
|Life beyond kinases: structure-based discovery of sorafenib as nanomolar antagonist of 5-HT receptors|
X Lin, XP Huang, G Chen, R Whaley, S Peng, Y Wang, G Zhang, ...
Journal of medicinal chemistry 55 (12), 5749-5759, 2012
|Binding-site assessment by virtual fragment screening|
N Huang, MP Jacobson
PLoS One 5 (4), e10109, 2010
|Ainsliadimer A selectively inhibits IKKα/β by covalently binding a conserved cysteine|
T Dong, C Li, X Wang, L Dian, X Zhang, L Li, S Chen, R Cao, L Li, ...
Nature communications 6 (1), 1-12, 2015
|Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by HhaI methyltransferase|
JR Horton, G Ratner, NK Banavali, N Huang, Y Choi, MA Maier, ...
Nucleic acids research 32 (13), 3877-3886, 2004