Sakda Khoomrung

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Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
Kwanjeera WanichthanarakFaculty of Medicine Siriraj Hospital, Mahidol UniversityVerified email at mahidol.ac.th
Intawat NookaewUniversity of Arkansas for Medical SciencesVerified email at uams.edu
Narumol JariyasopitFaculty of Medicine Siriraj Hospital, Mahidol UniversityVerified email at mahidol.ac.th
Verena SiewersChalmers University of TechnologyVerified email at chalmers.se
Yongyut SirivatanauksornVerified email at mahidol.ac.th
Patcha PoungsombatResearch Assistant at Metabolomics and Systems Biology group (Siriraj Metabolomics Center (SiMPC) and the Department of Biochemistry , Faculty of Medicine Siriraj Hospital , Mahidol University)Verified email at mahidol.ac.th
Partho SenData Scientist, Mayo Clinic, Rochester, MN, USAVerified email at mayo.edu
Dmitry GrapovScience DataistVerified email at creative-data.solutions
Suphitcha LimjiasahapongResearch assistant,Siriraj Metabolomics and Phenomics Center (SiMPC), Faculty of Medicine, SirirajVerified email at mahidol.ac.th
yotsawat pomyenResearch Scientist, Chulabhorn Research InstituteVerified email at cri.or.th
Pramote ChumnanpuenDepartment of Zoology, Faculty of Science, Kasetsart UniversityVerified email at ku.th
Wonnop VisessanguanFaculty of Medicine Siriraj Hospital, Mahidol University, ThailandVerified email at mahidol.ac.th
anastasia krivoruchkoVerified email at chalmers.se
Nuankanya SathirapongsasutiLecturer, Section for Translational Medicine, Mahidol UniversityVerified email at mahidol.edu
Vichai ReutrakulProfessorVerified email at mahidol.ac.th
Atikorn PanyaFood Biotechnology research team, BIOTEC, NSTDA, ThailandVerified email at biotec.or.th
Kobkul LaotengNational Center for Genetic Engineering and BiotechnologyVerified email at biotec.or.th
Chagriya KitiyakaraRamathibodi Hospital, Mahidol University, Bangkok, ThailandVerified email at mahidol.edu
Shuobo ShiBeijing University of Chemical TechnologyVerified email at mail.buct.edu.cn

Sakda Khoomrung

Faculty of Medicine Siriraj Hospital, Mahidol University Thailand

Verified email at mahidol.edu - Homepage

Mass Spectrometry Metabolomics Systems Biology Quantitative Biology Precision Medicine


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Rise of deep learning for genomic, proteomic, and metabolomic data integration in precision medicine D Grapov, J Fahrmann, K Wanichthanarak, S Khoomrung Omics: a journal of integrative biology 22 (10), 630-636, 2018	230	2018
Functional expression and characterization of five wax ester synthases in Saccharomyces cerevisiae and their utility for biodiesel production S Shi, JO Valle-Rodríguez, S Khoomrung, V Siewers, J Nielsen Biotechnology for biofuels 5, 1-10, 2012	172	2012
Deep metabolome: Applications of deep learning in metabolomics Y Pomyen, K Wanichthanarak, P Poungsombat, J Fahrmann, D Grapov, ... Computational and Structural Biotechnology Journal 18, 2818-2825, 2020	131	2020
Rapid quantification of yeast lipid using microwave-assisted total lipid extraction and HPLC-CAD S Khoomrung, P Chumnanpuen, S Jansa-Ard, M Ståhlman, I Nookaew, ... Analytical chemistry 85 (10), 4912-4919, 2013	130	2013
Modular pathway rewiring of Saccharomyces cerevisiae enables high-level production of L-ornithine J Qin, YJ Zhou, A Krivoruchko, M Huang, L Liu, S Khoomrung, V Siewers, ... Nature Communications 6 (1), 8224, 2015	121	2015
Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments E Fletcher, A Feizi, MMM Bisschops, BM Hallström, S Khoomrung, ... Metabolic engineering 39, 19-28, 2017	116	2017
Deep learning meets metabolomics: a methodological perspective P Sen, S Lamichhane, VB Mathema, A McGlinchey, AM Dickens, ... Briefings in Bioinformatics 22 (2), 1531-1542, 2021	86	2021
Changes in lipid metabolism convey acid tolerance in Saccharomyces cerevisiae Z Guo, S Khoomrung, J Nielsen, L Olsson Biotechnology for biofuels 11, 1-15, 2018	77	2018
Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae S Khoomrung, P Chumnanpuen, S Jansa-Ard, I Nookaew, J Nielsen Applied Microbiology and Biotechnology 94, 1637-1646, 2012	77	2012
Physiological characterization of the high malic acid-producing Aspergillus oryzae strain 2103a-68 C Knuf, I Nookaew, I Remmers, S Khoomrung, S Brown, A Berry, ... Applied microbiology and biotechnology 98, 3517-3527, 2014	75	2014
Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains A Rodriguez, Y Chen, S Khoomrung, E Özdemir, I Borodina, J Nielsen Metabolic Engineering 44, 265-272, 2017	73	2017
Comparative systems analyses reveal molecular signatures of clinically tested vaccine adjuvants TA Olafsdottir, M Lindqvist, I Nookaew, P Andersen, J Maertzdorf, ... Scientific reports 6 (1), 39097, 2016	59	2016
Polycyclic aromatic compounds in urban air and associated inhalation cancer risks: A case study targeting distinct source sectors N Jariyasopit, P Tung, K Su, S Halappanavar, GJ Evans, Y Su, ... Environmental pollution 252, 1882-1891, 2019	58	2019
A maternal diet of fatty fish reduces body fat of offspring compared with a maternal diet of beef and a post‐weaning diet of fish improves insulin sensitivity and lipid profile … A Hussain, I Nookaew, S Khoomrung, L Andersson, I Larsson, L Hulthén, ... Acta Physiologica 209 (3), 220-234, 2013	47	2013
Identification of arsenolipids with GC/MS G Raber, S Khoomrung, MS Taleshi, JS Edmonds, KA Francesconi Talanta 78 (3), 1215-1218, 2009	45	2009
Accounting for biological variation with linear mixed-effects modelling improves the quality of clinical metabolomics data K Wanichthanarak, S Jeamsripong, N Pornputtapong, S Khoomrung Computational and structural biotechnology journal 17, 611-618, 2019	44	2019
Metabolomics and integrative omics for the development of Thai traditional medicine S Khoomrung, K Wanichthanarak, I Nookaew, O Thamsermsang, ... Frontiers in pharmacology 8, 474, 2017	42	2017
Enhanced amino acid utilization sustains growth of cells lacking Snf1/AMPK R Nicastro, F Tripodi, C Guzzi, V Reghellin, S Khoomrung, C Capusoni, ... Biochimica et Biophysica Acta (BBA)-Molecular Cell Research 1853 (7), 1615-1625, 2015	41	2015
Deep learning facilitates multi-data type analysis and predictive biomarker discovery in cancer precision medicine VB Mathema, P Sen, S Lamichhane, M Orešič, S Khoomrung Computational and Structural Biotechnology Journal 21, 1372-1382, 2023	39	2023
Improved quantification of farnesene during microbial production from Saccharomyces cerevisiae in two-liquid-phase fermentations S Tippmann, J Nielsen, S Khoomrung Talanta 146, 100-106, 2016	24	2016

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